is a Knowledge Graph.
PheKnowLator (Phenotype Knowledge Translator; pkt_kg) is a customizable knowledge graph (KG) construction framework enabling users to build large, heterogeneous KGs that are Semantic Web compliant and amenable to OWL reasoning, generate property graphs, and export to formats compatible with popular graph toolkits. The project provides configurable build recipes (e.g., OWL, property graph), reproducible pipelines, and documentation for deployment and usage in the GitHub Wiki.
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Tiffany Callahan
Github: callahantiff
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| pheknowlator.graph | PheKnowLator graph | knowledge_graphs?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&inv=1&invt=Ab5_1Q&project=pheknowlator | Graph | owl | PheKnowLator graph files, including s... |
| pheknowlator.code | PheKnowLator code | PheKnowLator | Process | python | Code for generating PheKnowLator |
| pheknowlator.doc | PheKnowLator Wiki | wiki | Documentation | http | User and developer documentation for ... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| mgmlink.code | MGMLink code | MGMLink | Process | python | had primary source | Code for generating MGMLink |
| np-kg.graph.tsv | NP-KG TSV | NP-KG_v3.0.0.tsv?download=1 (1.0 GB) | Graph | tsv | had primary source | Merged KG with ontology-grounded KG a... |
| np-kg.graph.networkx | NP-KG gpickle | NP-KG_v3.0.0.gpickle?download=1 (892.7 MB) | Graph | mixed | had primary source | Merged KG with ontology-grounded KG a... |
PheKnowLator (Phenotype Knowledge Translator) or pkt_kg is the first fully customizable knowledge graph (KG) construction framework enabling users to build complex KGs that are Semantic Web compliant and amenable to automatic Web Ontology Language (OWL) reasoning, generate contemporary property graphs, and are importable by today’s popular graph toolkits.
Created: March 09, 2025 | Last modified: September 23, 2026