phenio

is a General purpose Resource.

An ontology for accessing and comparing knowledge concerning phenotypes across species and genetic backgrounds.

Domains

phenotype

License

BSD3

Homepage

phenio

Repository

GitHub

Infores ID

infores:phenio

FAIRsharing ID

Unknown

Product Summary

Contacts

Products

From this Resource
ID Name URL Category Format Description
phenio.model phenio phenio.owl Product owl OWL version of phenio
phenio.graph KG-Phenio kg-phenio.tar.gz (44.9 MB) GraphProduct kgx PHENIO as a KGX graph
From other Resources
ID Name URL Category Format Relation Description
kg-monarch.graph KGX Distribution of KG-Monarch monarch-kg.tar.gz (220.2 MB) GraphProduct kgx had primary source KGX Distribution of KG-Monarch
kg-monarch.graph.jsonl KGX JSON-L Distribution of KG-Monarch monarch-kg.jsonl.tar.gz (301.0 MB) GraphProduct kgx-jsonl had primary source KGX JSON-Lines Distribution of KG-Mon...
kg-monarch.graph.rdf RDF Distribution of KG-Monarch monarch-kg.nt.gz (838.5 MB) GraphProduct rdfxml had primary source RDF Distribution of KG-Monarch
kg-monarch.graph.neo4j Neo4j Dump of KG-Monarch monarch-kg.neo4j.dump (1.3 GB) GraphProduct had primary source Neo4j Dump of KG-Monarch
kg-monarch.graph.duckdb DuckDB database of KG-Monarch monarch-kg.duckdb (6.4 GB) GraphProduct had primary source DuckDB database of KG-Monarch
kg-monarch.graph.jsonl.edges KGX JSON-L Distribution of KG-Monarch Edges monarch-kg_edges.jsonl (14.2 GB) GraphProduct kgx-jsonl had primary source KGX JSON-Lines Distribution of KG-Mon...
kg-monarch.graph.jsonl.nodes KGX JSON-L Distribution of KG-Monarch Nodes monarch-kg_nodes.jsonl (1.1 GB) GraphProduct kgx-jsonl had primary source KGX JSON-Lines Distribution of KG-Mon...
kg-monarch.graph.neo4j.edges Neo4j Dump of KG-Monarch Edges monarch-kg_edges.neo4j.csv (4.1 GB) GraphProduct neo4j had primary source Neo4j Dump of KG-Monarch Edges
kg-monarch.graph.neo4j.nodes Neo4j Dump of KG-Monarch Nodes monarch-kg_nodes.neo4j.csv (333.4 MB) GraphProduct neo4j had primary source Neo4j Dump of KG-Monarch Nodes
kg-monarch.phenio.semsql Phenio SQLite (SemSQL) phenio.db.gz (3.2 GB) Product sqlite had primary source Phenio SQLite database in SemSQL form...

Usages

PHENIO is used by the Monarch Initiative for cross-species inference
PHENIO is used by the Monarch Initiative for cross-species inference. As an example, the disease of Parkinsonism may compared on the basis of its phenotype in humans vs. mouse genes and genotypes known to impact these phenotypes.
Type
actual
Link
https://monarchinitiative.org/HP:0001300#disease
Publications
Users
  • The Monarch Initiative

Details

PHENIO

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Created: March 09, 2025 | Last modified: February 20, 2026