is a Data Source.
The Physiome Model Repository (PMR) is the IUPS Physiome Project's open repository of mathematical models of physiology, run by the Auckland Bioengineering Institute. It hosts CellML models (the CellML Model Repository) along with FieldML and SED-ML files in version-controlled Git workspaces, and publishes curated, annotated views of them as exposures. On 2026-10-04 its JSON listings held 1,303 workspaces and 1,108 exposures. Public content is licensed under CC BY 3.0.
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| physiome-model-repository.portal | Physiome Model Repository Portal | models.physiomeproject.org | Graphical Interface | http | Web portal for searching, browsing an... |
| physiome-model-repository.exposures | PMR Exposures | exposure | Graphical Interface | http | Listing of exposures, the published a... |
| physiome-model-repository.workspaces | PMR Workspaces | workspace (1 B) | Product | mixed | Listing of version-controlled model w... |
| physiome-model-repository.api | PMR2 JSON Web Service | webservice.html | Programming Interface | json | JSON web service on the same URLs as ... |
| physiome-model-repository.docs | PMR User Documentation | latest | Documentation | http | PMR user documentation covering works... |
| physiome-model-repository.code | PMR2 Source Code | PMR2 | Process | python | Source code for PMR2, the Plone-based... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| omicsdi.portal | OmicsDI Portal | www.omicsdi.org | Graphical Interface | http | had primary source | Web portal for searching and browsing... |
| omicsdi.api | OmicsDI API | index.html | Programming Interface | http | had primary source | Swagger-documented web service for pr... |
The Physiome Model Repository (PMR) is the open model repository of the IUPS Physiome Project, developed and run by the Auckland Bioengineering Institute at the University of Auckland. It is best known as the home of the CellML Model Repository (also served at models.cellml.org), and it also stores FieldML and SED-ML files.
git clone <workspace URI>.On 2026-10-04 the JSON listings returned 1,303 workspaces and 1,108 exposures.
There is no separate API server. The same URLs return JSON when requested with Accept: application/vnd.physiome.pmr2.json.1 (Collection+JSON) or application/vnd.physiome.pmr2.json.0 (plain JSON), as described in the user documentation.
The repository’s license and citation pages state that all publicly accessible content is licensed under the Creative Commons Attribution 3.0 Unported License.
PMR is one of the model repositories indexed by OmicsDI. The CellML format itself is specified at https://www.cellml.org/specifications.
Created: October 04, 2026 | Last modified: October 05, 2026