is an Aggregator.
piRBase is a manually curated database for PIWI-interacting RNAs (piRNAs), focused on piRNA functional analysis and annotation. It integrates high-throughput sequencing data from multiple organisms and provides comprehensive information about piRNA sequences, genomic locations, functional annotations, and epigenetic features.
genomics, biological systems
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| pirbase.portal | piRBase Portal | piRBase | GraphicalInterface | http | Web portal for searching and browsing... |
| pirbase.browse | piRBase Browse Interface | browse.php | GraphicalInterface | http | Browse interface for exploring piRNAs... |
| pirbase.function | piRNA Function Interface | function.php | GraphicalInterface | http | Function annotation interface for piR... |
| pirbase.genome | Genome Browser Interface | genome.php | GraphicalInterface | http | Genome browser interface for viewing ... |
| pirbase.epigenetics | Epigenetics Interface | methylation.php | GraphicalInterface | http | Epigenetics interface for exploring m... |
| pirbase.tools | piRBase Tools | tools.php | GraphicalInterface | http | Tools interface for piRNA analysis ut... |
| pirbase.hsa-sequences ⚠ | Human piRNA Sequences | download.php | Product | fasta | FASTA format sequences for human piRN... |
| pirbase.mmu-sequences ⚠ | Mouse piRNA Sequences | download.php | Product | fasta | FASTA format sequences for mouse piRN... |
| pirbase.rno-sequences ⚠ | Rat piRNA Sequences | download.php | Product | fasta | FASTA format sequences for rat piRNAs |
| pirbase.dme-sequences ⚠ | Drosophila piRNA Sequences | download.php | Product | fasta | FASTA format sequences for Drosophila... |
| pirbase.cel-sequences ⚠ | C. elegans piRNA Sequences | download.php | Product | fasta | FASTA format sequences for C. elegans... |
| pirbase.dre-sequences ⚠ | Zebrafish piRNA Sequences | download.php | Product | fasta | FASTA format sequences for zebrafish ... |
| pirbase.hsa-gold ⚠ | Human Gold Standard piRNAs | download.php | Product | fasta | Gold standard human piRNA sequences w... |
| pirbase.mmu-gold ⚠ | Mouse Gold Standard piRNAs | download.php | Product | fasta | Gold standard mouse piRNA sequences w... |
| pirbase.dme-gold ⚠ | Drosophila Gold Standard piRNAs | download.php | Product | fasta | Gold standard Drosophila piRNA sequen... |
| pirbase.hsa-bed ⚠ | Human piRNA Coordinates (hg19) | download.php | Product | txt | Genome coordinates for human piRNAs o... |
| pirbase.hsa-grch38-bed ⚠ | Human piRNA Coordinates (GRCh38) | download.php | Product | txt | Genome coordinates for human piRNAs o... |
| pirbase.mmu-bed ⚠ | Mouse piRNA Coordinates (GRCm38) | download.php | Product | txt | Genome coordinates for mouse piRNAs o... |
| pirbase.dme-bed ⚠ | Drosophila piRNA Coordinates (BDGP6) | download.php | Product | txt | Genome coordinates for Drosophila piR... |
| pirbase.tutorial ⚠ | piRBase Tutorial | about.php | DocumentationProduct | http | Tutorial and user manual for piRBase |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| rnacentral.portal | RNAcentral Portal | rnacentral.org | GraphicalInterface | http | Web portal for searching and browsing... |
| rnacentral.api | RNAcentral REST API | api | ProgrammingInterface | http | REST API for programmatic access to R... |
| rnacentral.ftp | RNAcentral FTP Archive | RNAcentral | Product | http | FTP archive with current and archived... |
| rnacentral.public-db | RNAcentral Public Postgres Database | public-database | DataModelProduct | postgres | Public PostgreSQL database for direct... |
Created: January 01, 2014 | Last modified: October 21, 2025