planteome

is an Aggregator.

It is part of the BER collection.

Planteome is an integrated resource that develops and hosts a suite of reference plant ontologies (including the Plant Ontology, Plant Trait Ontology, and Plant Experimental Conditions Ontology) alongside species-specific crop ontologies. It aggregates and cross-references genome and phenotype annotations from many plant species against these common ontologies, enabling comparative genomics and phenomics across taxa. The resource is maintained at Oregon State University and provides an AmiGO-based browser for searching ontology terms, bioentities, and annotations. Planteome serves as the upstream source for derived knowledge graphs such as eco-KG.

License

Not specified

Homepage

planteome

Repository

Unknown

Infores ID

Unknown

FAIRsharing ID

Unknown

Product Summary

Products

From this Resource
ID Name URL Category Format Description
planteome.browser Planteome Ontology Browser amigo GraphicalInterface http AmiGO-based Planteome ontology browse...
planteome.po Plant Ontology (PO) po.owl (352.4 KB) OntologyProduct owl The Plant Ontology (PO), a Planteome ...
From other Resources
ID Name URL Category Format Relation Description
eco-kg.graph eco-KG Graph eco-kg GraphProduct kgx had primary source Knowledge graph containing plant trai...

Details

Planteome

Description

Planteome is an integrated resource that develops reference plant ontologies and aggregates genome and phenotype annotations across many plant species against those common ontologies. The reference ontologies include the Plant Ontology (PO), Plant Trait Ontology (TO), and Plant Experimental Conditions Ontology (PECO), complemented by species-specific crop ontologies. By mapping annotations from diverse taxa onto shared vocabularies, Planteome supports comparative plant genomics and phenomics. The resource is hosted at Oregon State University (planteome.org) and is the upstream source for derived knowledge graphs such as eco-KG.

Products

  • Planteome Ontology Browser: An AmiGO-based web interface for searching ontology terms, bioentities, and aggregated annotations.
  • Plant Ontology (PO): A downloadable OWL reference ontology covering plant anatomy, morphology, and developmental stages.

Is this information incorrect or incomplete? Request an update.

Created: June 18, 2026 | Last modified: June 18, 2026