is a Data Source.
ProteomeHD is a proteomics resource centered on protein co-regulation evidence across perturbation experiments. It provides scripts and data from a human proteome co-regulation map used to identify protein functions and to support integrated protein association resources.
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| proteomehd.data | ProteomeHD Data | ProteomeHD_v1_1.7z (9.0 MB) | Product | csv | Compressed CSV file containing Proteo... |
| proteomehd.reactome_tp_fp | ProteomeHD Reactome Gold Standard | Reactome_TP_FP.7z (11.9 MB) | Product | csv | Reactome-derived true-positive and fa... |
| proteomehd.intact_interactions | ProteomeHD IntAct Interactions | IntAct_interactions.7z (1.3 MB) | Product | csv | Pre-processed human IntAct interactio... |
| proteomehd.uniprot_annotations | ProteomeHD UniProt Annotation File | uniprot-all.7z (837.0 KB) | Product | txt | Reviewed UniProt protein annotation f... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| string.protein.links | STRING Protein Links | protein.links.v12.0.txt.gz (128.7 GB) | GraphProduct | txt | had primary source | protein network data (full network, s... |
| string.protein.links.detailed | STRING Protein Links Detailed | protein.links.detailed.v12.0.txt.gz (189.6 GB) | GraphProduct | txt | had primary source | protein network data (full network, i... |
| string.protein.links.full | STRING Protein Links Full | protein.links.full.v12.0.txt.gz (199.6 GB) | GraphProduct | txt | had primary source | protein network data (full network, i... |
| string.protein.physical.links | STRING Protein Physical Links | protein.physical.links.v12.0.txt.gz (11.1 GB) | GraphProduct | txt | had primary source | protein network data (physical subnet... |
| string.protein.physical.links.detailed | STRING Protein Physical Links Detailed | protein.physical.links.detailed.v12.0.txt.gz (13.8 GB) | GraphProduct | txt | had primary source | protein network data (physical subnet... |
| string.protein.physical.links.full | STRING Protein Physical Links Full | protein.physical.links.full.v12.0.txt.gz (14.5 GB) | GraphProduct | txt | had primary source | protein network data (physical subnet... |
| string.cog.links | STRING COG Links | COG.links.v12.0.txt.gz (176.8 MB) | GraphProduct | txt | had primary source | association scores between orthologou... |
| string.cog.links.detailed | STRING COG Links Detailed | COG.links.detailed.v12.0.txt.gz (238.7 MB) | GraphProduct | txt | had primary source | association scores (incl. subscores p... |
| string.database | STRING Database Network Schema | network_schema.v12.0.sql.gz (262.2 GB) | GraphProduct | ❔ | had primary source | full database, part II: the networks ... |
ProteomeHD provides protein-level co-regulation data and analysis scripts from a human proteome co-regulation map. The repository includes the compressed ProteomeHD v1.1 data matrix and supporting files used for Reactome, IntAct, UniProt, and GO-based analyses.
Created: February 18, 2026 | Last modified: June 02, 2026