is an Aggregator.
PubMed is a free search engine accessing primarily the MEDLINE database of references and abstracts on life sciences and biomedical topics, maintained by the United States National Library of Medicine (NLM) at the National Institutes of Health (NIH). MEDLINE is NLM's premier bibliographic database containing more than 31 million references to journal articles indexed with Medical Subject Headings (MeSH). PubMed comprises more than 39 million citations for biomedical literature from MEDLINE, life science journals, and online books, with citations including links to full-text content from PubMed Central and publisher web sites. The database is updated daily and covers publications from the 1950s to the present.
infores:pubmed
Unknown
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| pubmed.portal | PubMed Web Portal | pubmed.ncbi.nlm.nih.gov | GraphicalInterface | http | Web interface for searching and brows... |
| pubmed.eutils | PubMed E-utilities API | NBK25501 | ProgrammingInterface | http | Entrez Programming Utilities (E-utili... |
| pubmed.baseline | PubMed Annual Baseline Files | baseline | Product | xml | Annual baseline set of PubMed citatio... |
| pubmed.updates | PubMed Daily Update Files | updatefiles | Product | xml | Daily update files containing new, re... |
| pubmed.help | PubMed Help Documentation | help | DocumentationProduct | http | Comprehensive PubMed help documentati... |
| pubmed.advanced.search | PubMed Advanced Search | advanced | GraphicalInterface | http | Advanced search builder with field-sp... |
| pubmed.clinical.queries | PubMed Clinical Queries | clinical | GraphicalInterface | http | Specialized clinical queries interfac... |
| pubmed.dtd | PubMed DTD Documentation | index.html | DocumentationProduct | http | PubMed DTD documentation with annotat... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| ncbigene.gene2pubmed | Gene to PubMed Mapping | gene2pubmed.gz (219.6 MB) | MappingProduct | tsv | had primary source | Gene to PubMed mapping data providing... |
| spoke.graph | SPOKE Graph | data-tools | GraphProduct | http | had primary source | The SPOKE knowledge graph containing ... |
| indra.cogex.code | INDRA CoGEx Build Code | indra_cogex | ProcessProduct | ❔ | had primary source | INDRA CoGEx is a graph database integ... |
| genecards.literature ⚠ | GeneCards Literature References | www.genecards.org | Product | http | had primary source | Literature references from PubMed aut... |
| omnicorp.cooccurrence | OmniCorp Co-occurrence Data | OmniCorp | Product | mixed | had primary source | Co-occurrence database generated from... |
| omnicorp.api ⚠ | OmniCorp API | OmniCorp | ProgrammingInterface | http | had primary source | API behavior documented for adding co... |
| atom.kg ⚠ | ATOM Knowledge Graph | BIBM47256.2019.8983062 | GraphProduct | ❔ | had primary source | Anti-tumor biomaterial knowledge grap... |
| amyco.annotations | AmyCo Curated Annotations | ❔ | Product | ❔ | had primary source | Manually curated disease-gene associa... |
| forum.graph.dump ⚠ | FORUM Knowledge Graph Dump | share.tar.gz | GraphProduct | ❔ | had primary source | Downloadable knowledge graph dump in ... |
| medgen.pubmed-links | MedGen PubMed Links | medgen_pubmed_lnk.txt.gz (228.8 MB) | Product | txt | had primary source | Links between MedGen concepts and Pub... |
| atom.pipeline ⚠ | ATOM Construction Pipeline | BIBM47256.2019.8983062 | ProcessProduct | ❔ | had primary source | Natural language processing pipeline ... |
| forum.webapp | FORUM Web Application | forum-webapp.semantic-metabolomics.fr | GraphicalInterface | ❔ | had primary source | FORUM web application interface for s... |
| forum.api | FORUM API | openapi-documentation | ProgrammingInterface | ❔ | had primary source | FORUM REST API for programmatic acces... |
| forum.void | FORUM VoID Metadata | void (94.2 KB) | DocumentationProduct | ❔ | had primary source | FORUM VoID (Vocabulary of Interlinked... |
| gnbr.graph | GNBR graph | 3459420 | GraphProduct | ❔ | had primary source | Text-mined biomedical knowledge graph... |
| hald.literature-info.json | HALD Literature Info | 43612512 (814.7 MB) | Product | json | had primary source | Version 6 JSON file containing litera... |
| hald.entity-info.json | HALD Entity Info | 43612509 (283.0 MB) | Product | json | had primary source | Version 6 JSON file containing entity... |
| hald.relation-info.json | HALD Relation Info | 43612506 (93.7 MB) | GraphProduct | json | had primary source | Version 6 JSON file containing relati... |
| hald.aging-biomarkers.json | HALD Aging Biomarkers | 43612503 (1.1 MB) | Product | json | had primary source | Version 6 JSON file containing aging ... |
| hald.longevity-biomarkers.json | HALD Longevity Biomarkers | 43612497 (331.4 KB) | Product | json | had primary source | Version 6 JSON file containing longev... |
| hald.entities.csv | HALD Neo4j Entities | 43612494 (234.2 KB) | Product | csv | had primary source | Version 6 CSV file containing entity ... |
| hald.roles.csv | HALD Neo4j Roles | 43612500 (4.8 MB) | Product | csv | had primary source | Version 6 CSV file containing relatio... |
| hald.browser | HALD Web Interface | hald | GraphicalInterface | http | had primary source | Interactive web interface for searchi... |
| ikraph.site | BioKDE | biokde.insilicom.com | GraphicalInterface | http | had primary source | Biomedical Knowledge Discovery Engine... |
| ikraph.code | iKraph Code | iKraph | ProcessProduct | ❔ | had primary source | Code for named entity recognition, re... |
| ikraph.graph | iKraph graph metadata | data.tar.gz?download=1 (58.3 MB) | GraphProduct | json | had primary source | Graph metadata for iKraph, including ... |
| ikraph.graphdata | iKraph graph data | iKraph_full.tar.gz?download=1 (1.3 GB) | GraphProduct | ❔ | had primary source | Complete graph data for iKraph with a... |
| medkb.site | MedKG Site | medkg | GraphicalInterface | ❔ | had primary source | Graphical interface for MedKG |
| reprotox-kg.portal | ReproTox-KG Explorer | reprotox-kg | GraphicalInterface | http | had primary source | Public web interface for querying and... |
| reprotox-kg.data | ReproTox-KG Data Assets | markdown | Product | http | had primary source | Data and content assets published wit... |
| suppkg.docs | SuppKG Documentation | SuppKG | DocumentationProduct | http | had primary source | Translator wiki page describing SuppK... |
| suppkg.source-data | SuppKG Source Data Repository | SuppKG | ProcessProduct | http | had primary source | Source data directory used for SuppKG... |
| tbkg.data | TBKG Knowledge Graph Data | full#supplementary-material | GraphProduct | mixed | had primary source | Weighted heterogeneous knowledge grap... |
| tbkg.osimertinib_case_study | TBKG Osimertinib ADR Case Study Data | full#supplementary-material | Product | mixed | had primary source | Clinical validation dataset with calc... |
| ttd.targets-raw ⚠ | TTD Targets Information | P1-01-TTD_target_download.txt | Product | txt | had primary source | Raw format target information includi... |
| ttd.drug-disease ⚠ | Drug-Disease Mapping | P1-05-Drug_disease.txt | Product | txt | had primary source | Drug to disease mapping with ICD iden... |
| ttd.target-disease ⚠ | Target-Disease Mapping | P1-06-Target_disease.txt | Product | txt | had primary source | Target to disease mapping with ICD id... |
| ttd.target-drug ⚠ | Target-Drug Mapping | P1-07-Drug-TargetMapping.xlsx | Product | csv | had primary source | Target to drug mapping with mode of a... |
| ttd.biomarker-disease ⚠ | Biomarker-Disease Mapping | P1-08-Biomarker_disease.txt | Product | txt | had primary source | Biomarker to disease mapping with ICD... |
| ttd.target-compound ⚠ | Target-Compound Activity Data | P1-09-Target_compound_activity.txt | Product | txt | had primary source | Target to compound mapping with exper... |
| glkb.site | GLKB Site | glkb.org | GraphicalInterface | http | was influenced by | Graphical interface for GLKB |
| entrez.eutils | Entrez E-utilities | NBK25501 | ProgrammingInterface | json | was informed by | E-utilities API for programmatic acce... |
| gendr.data | GenDR Data Download | dataset.zip (8.0 KB) | Product | csv | was informed by | Downloadable dataset of dietary restr... |
| gendr.expression-signatures | GenDR Dietary Restriction Expression Signatures | TableS2.xls (48.0 KB) | Product | http | was informed by | Excel spreadsheet of dietary-restrict... |
| litvar.web_interface | LitVar Web Interface | litvar2 | GraphicalInterface | http | was derived from | Web interface for searching and retri... |
| litvar.api | LitVar API | litvar2-api | ProgrammingInterface | http | was derived from | RESTful API providing programmatic ac... |
| metabokg.graph ⚠ | MetaboKG RDF Graph | MetaBoKG | GraphProduct | ❔ | had primary source | RDF knowledge graph materialized by t... |
| dbptm.downloads | dbPTM Download Datasets | download.php | Product | tsv | was derived from | dbPTM downloads for experimental and ... |
| dbsno.downloads ⚠ | dbSNO Download Dataset | download.php | Product | tsv | was derived from | Tab-delimited dbSNO 3.0 S-nitrosylati... |
| phosphoelm.dataset | Phospho.ELM Dataset | dataset.html | Product | mixed | was derived from | Phospho.ELM version 9.0 dataset reque... |
| rlims-p.portal | RLIMS-P Web Portal | rlimsp2 | GraphicalInterface | http | used | RLIMS-P web portal for searching phos... |
| rlims-p.text-mining-service | RLIMS-P Text-Mining Service | rlimsp2 | ProcessProduct | ❔ | used | Rule-based text-mining service for ex... |
| acukg.csv | AcuKG CSV tables | AcuKG | GraphProduct | csv | had primary source | Source CSV tables for AcuKG, includin... |
| acukg.rdf | AcuKG RDF Turtle files | AcuKG_RDF | GraphProduct | ttl | had primary source | RDF Turtle representation of AcuKG re... |
| acukg.json | AcuKG JSON files | AcuKG_json | GraphProduct | json | had primary source | JSON representation of AcuKG relation... |
| foodb.web | FooDB Web Interface | foodb.ca | GraphicalInterface | ❔ | was informed by | Web interface that allows searching, ... |
| foodb.data.csv | FooDB CSV Data | foodb_2020_4_7_csv.tar.gz (952.1 MB) | Product | csv | was informed by | Complete FooDB database in CSV format |
| foodb.data.xml | FooDB XML Data | foodb_2020_4_7_xml.tar.gz (6.3 GB) | Product | xml | was informed by | Complete FooDB database in XML format |
| foodb.data.json | FooDB JSON Data | foodb_2020_04_07_json.zip (86.6 MB) | Product | json | was informed by | Complete FooDB database in JSON format |
| foodb.data.mysql | FooDB MySQL Dump | foodb_2020_4_7_mysql.tar.gz (172.5 MB) | Product | ❔ | was informed by | Complete FooDB database as MySQL dump |
| ickg.graph-data | ICKG graph data | data | GraphProduct | csv | had primary source | Immune cell type-specific node and re... |
| myaura.graph | myAURA epilepsy knowledge graph | myaura | GraphProduct | ❔ | had primary source | Multilayer epilepsy knowledge graph g... |
Created: October 31, 2025 | Last modified: October 31, 2025