is a Data Source.
The Rat Genome Database (RGD) curates and integrates rat genomic and phenotype data, and provides tools for genomics, physiology and functional genomics in rats. RGD contains comprehensive data on genes, QTLs, strains, and genomic elements for rat, human, mouse, chinchilla, dog, cat, pig, bonobo, squirrel, green monkey, and naked mole rat. The database includes extensive ontology annotations (RDO, CMO, ChEBI, EFO, GO, HP, MMO, MP, PW, RS, VT, XCO), variant information, pathway data, and disease relationships.
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| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| disgenet.data | DisGeNET Data | www.disgenet.com | Graph | http | had primary source | DisGeNET data, including gene to dise... |
| rnacentral.portal | RNAcentral Portal | rnacentral.org | Graphical Interface | http | had primary source | Web portal for searching and browsing... |
| rnacentral.api | RNAcentral REST API | api | Programming Interface | http | had primary source | REST API for programmatic access to R... |
| rnacentral.ftp | RNAcentral FTP Archive | RNAcentral | Product | http | had primary source | FTP archive with current and archived... |
| rnacentral.public-db | RNAcentral Public Postgres Database | public-database | Data Model | postgres | had primary source | Public PostgreSQL database for direct... |
| obo-db-ingest.rgd.tsv | rgd Nodes TSV | rgd.tsv (1.6 MB) | Product | tsv | had primary source | rgd Nodes TSV |
| genecards.web.interface | GeneCards Web Interface | www.genecards.org | Graphical Interface | http | had primary source | Web-based interface for searching and... |
| kg-alzheimers.graph ⚠ | KGX Distribution of KG-Alzheimers | kg-alzheimers.tar.gz (201.1 MB) | Graph | kgx | had primary source | KGX Distribution of KG-Alzheimers |
| sri-reference-kg.graph | SRI-Reference KG (KGX distribution) | monarch-kg.tar.gz (219.4 MB) | Graph | kgx | had primary source | KGX distribution of the SRI-Reference KG |
| neo.model | neo OWL release | neo.owl (2.0 GB) | Ontology | owl | had primary source | OWL release of neo |
| neo.obo | NEO (OBO format) | neo.obo (650.1 MB) | Ontology | obo | had primary source | OBO format release of NEO, built from... |
| obo-db-ingest.rgd.obo | rgd OBO | rgd.obo (3.6 MB) | Product | obo | had primary source | rgd OBO |
| obo-db-ingest.rgd.owl | rgd OWL | rgd.owl.gz (6.1 MB) | Product | owl | had primary source | rgd OWL |
| obo-db-ingest.rgd.json | rgd OBO Graph JSON | rgd.json.gz (4.2 MB) | Product | json | had primary source | rgd OBO Graph JSON |
| obo-db-ingest.rgd.sssom.tsv | rgd SSSOM | rgd.sssom.tsv (617.5 KB) | Mapping | sssom | had primary source | rgd SSSOM |
| babel.compendia | Babel Compendia | compendia | Product | json | had primary source | Babel compendia, one file per Biolink... |
| hcop.web | HCOP Search | hcop | Graphical Interface | http | was derived from | HCOP web search for orthologs of one ... |
| hcop.all-seven-column | HCOP All Species Orthologs (7 column) | human_all_hcop_seven_column.txt.gz (25.2 MB) | Mapping | tsv | was derived from | All human ortholog assertions from HC... |
| hcop.all-sixteen-column | HCOP All Species Orthologs (16 column) | human_all_hcop_sixteen_column.txt.gz (39.9 MB) | Mapping | tsv | was derived from | All human ortholog assertions from HC... |
| hcop.species-downloads | HCOP Per-species Bulk Downloads | tsv | Product | http | was derived from | HCOP bulk downloads page with pre-com... |
RGD is a multispecies genomics and phenomics database, providing comprehensive data for rat and other model organisms including genes, QTLs, strains, variants, pathways, and disease associations with extensive ontological annotations.
Created: December 03, 2025 | Last modified: September 23, 2026