is a Data Source.
SemMedDB is a repository of semantic predications (subject-predicate-object triples) extracted from biomedical literature by SemRep, a natural language processing system. It contains over 130 million semantic predications extracted from more than 37 million PubMed citations, supporting biomedical knowledge discovery, literature-based discovery, and clinical applications.
biomedical, literature, health, clinical, drug discovery, genomics, pharmacology
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| semmeddb.mysql | SemMedDB MySQL Database | SemMedDB_MySQL_database.html | Product | ❔ | MySQL database containing over 130 mi... |
| semmeddb.citations.csv | SemMedDB Citations CSV | CITATIONS.csv | Product | csv | CSV file containing citation informat... |
| semmeddb.entity.csv | SemMedDB Entity CSV | ENTITY.csv | Product | csv | CSV file containing entity informatio... |
| semmeddb.predication.csv | SemMedDB Predication CSV | PREDICATION.csv | Product | csv | CSV file containing semantic predicat... |
| semmeddb.sentence.csv | SemMedDB Sentence CSV | SENTENCE.csv | Product | csv | CSV file containing sentence informat... |
| semmeddb.semrep.tool | SemRep NLP System | SemRep_download.html | ProcessProduct | ❔ | The SemRep natural language processin... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| rtx-kg2.graph.nodes | RTX-KG2.10.1c KGX JSONL Nodes | kg2c-2.10.1-v1.0-nodes.jsonl.gz (359.1 MB) | GraphProduct | kgx-jsonl | Nodes for KGX distribution of the RTX... |
| rtx-kg2.graph.edges | RTX-KG2.10.1c KGX JSONL Edges | kg2c-2.10.1-v1.0-edges.jsonl.gz (1.7 GB) | GraphProduct | kgx-jsonl | Edges for KGX distribution of the RTX... |
| rtx-kg2.neo4j | RTX-KG2 Neo4j | arax.ncats.io | ProgrammingInterface | ❔ | Neo4j distribution of the RTX-KG2 as ... |
| epigraphdb.graph | EpiGraphDB Graph Database | graph-database | GraphProduct | neo4j | Integrated graph knowledge base combi... |