is a Data Source.
snoDB is a specialized database of human small nucleolar RNAs (snoRNAs), integrating data from established databases with manually curated literature. It provides comprehensive information on snoRNA genomic locations, sequences, conservation, host genes, snoRNA-RNA interactions, snoRNA-protein interactions, and abundance data across tissues and cancer cells.
genomics, biological systems
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| snodb.portal | snoDB 2.0 Portal | snoDB | GraphicalInterface | http | Web portal for searching, browsing, a... |
| snodb.abundance-viewer | Abundance Viewer | snoDB | GraphicalInterface | http | Interactive abundance viewer for visu... |
| snodb.rrna-modifications | rRNA Chemical Modifications Browser | rRNA_modifications | GraphicalInterface | http | Browser for exploring rRNA chemical m... |
| snodb.statistics | Statistics Dashboard | statistics | GraphicalInterface | http | Statistics dashboard showing snoRNA t... |
| snodb.sequence-search | Sequence Search Tool | sequence_similarity_search | GraphicalInterface | http | Sequence similarity search tool for f... |
| snodb.sequences ⚠ | snoRNA Sequences | snoDB | Product | http | Database of human snoRNA sequences wi... |
| snodb.conservation ⚠ | Conservation Data | snoDB | Product | http | Conservation data including PhastCons... |
| snodb.motifs ⚠ | Motif and Guide Region Data | snoDB | Product | http | snoRNA motif sequences and guide regi... |
| snodb.host-genes ⚠ | Host Gene Data | snoDB | Product | http | Host gene information with functional... |
| snodb.canonical-interactions ⚠ | Canonical snoRNA-RNA Interactions | snoDB | Product | http | Canonical snoRNA-rRNA and snoRNA-snRN... |
| snodb.noncanonical-interactions ⚠ | Non-canonical snoRNA-RNA Interactions | snoDB | Product | http | Non-canonical snoRNA-RNA interactions... |
| snodb.protein-interactions ⚠ | snoRNA-Protein Interactions | snoDB | Product | http | snoRNA-protein interactions from ENCO... |
| snodb.abundance ⚠ | Abundance Data | snoDB | Product | http | snoRNA and host gene abundance data f... |
| snodb.rrna-mods ⚠ | rRNA Modification Data | rRNA_modifications | Product | http | rRNA modification positions with vali... |
| snodb.copies ⚠ | snoRNA Copy Data | snoDB | Product | http | snoRNA copy information based on RFAM... |
| snodb.export ⚠ | Data Export | snoDB | Product | http | Exportable data tables with advanced ... |
| snodb.snorupdate | snoRupdate | snoRupdate | ProcessProduct | http | Tool for integrating snoDB snoRNAs in... |
| snodb.about ⚠ | About and Help Documentation | about | DocumentationProduct | http | Comprehensive documentation about dat... |
| snodb.tutorial ⚠ | Tutorial | tutorial | DocumentationProduct | http | Interactive tutorial for navigating a... |
| snodb.experiment-details ⚠ | Experiment Details | experiment_details | DocumentationProduct | http | Detailed information about TGIRT-Seq ... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| rnacentral.portal | RNAcentral Portal | rnacentral.org | GraphicalInterface | http | Web portal for searching and browsing... |
| rnacentral.api | RNAcentral REST API | api | ProgrammingInterface | http | REST API for programmatic access to R... |
| rnacentral.ftp | RNAcentral FTP Archive | RNAcentral | Product | http | FTP archive with current and archived... |
| rnacentral.public-db | RNAcentral Public Postgres Database | public-database | DataModelProduct | postgres | Public PostgreSQL database for direct... |
Created: October 27, 2025 | Last modified: October 27, 2025