snornadatabase

is a Data Source.

snoRNABase (also known as snoRNA-LBME-db) is a comprehensive database of human C/D box and H/ACA box small nucleolar RNAs (snoRNAs) and small Cajal body-specific RNAs (scaRNAs). The database contains 361 entries including 257 C/D box snoRNAs, 86 H/ACA snoRNAs, and 18 scaRNAs. It provides detailed information on snoRNA sequences, their genomic locations, host genes, target RNAs (rRNAs and spliceosomal RNAs), predicted base-pairing interactions with target nucleotides, and modification sites (2'-O-ribose methylation and pseudouridylation). Each entry includes literature references, GenBank accession numbers, and links to the UCSC Genome Browser. The database features search, browse, and "Find guide RNA" functions to identify snoRNAs that guide modifications of specific nucleotides in rRNAs (28S, 18S, 5.8S) and spliceosomal RNAs (U1, U2, U4, U5, U6, U12).

Domains

genomics

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Homepage

snornadatabase

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Products

From this Resource
ID Name URL Category Format Description
snornadatabase.portal snoRNABase Web Portal www-snorna.biotoul.fr GraphicalInterface http Web portal for searching and browsing...
snornadatabase.search snoRNABase Search cherche.php GraphicalInterface http Search engine for finding snoRNAs by ...
snornadatabase.find_guide snoRNABase Find Guide RNA guide.php GraphicalInterface http Tool for finding snoRNAs that guide m...
snornadatabase.browse snoRNABase Browse browse.php GraphicalInterface http Browse function for viewing and downl...
snornadatabase.blast snoRNABase BLAST blast ProgrammingInterface http BLAST search interface for sequence s...
From other Resources
ID Name URL Category Format Description
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rnacentral.api RNAcentral REST API api ProgrammingInterface http REST API for programmatic access to R...
rnacentral.ftp RNAcentral FTP Archive RNAcentral Product http FTP archive with current and archived...
rnacentral.public-db RNAcentral Public Postgres Database public-database DataModelProduct postgres Public PostgreSQL database for direct...

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Created: September 09, 2025 | Last modified: November 13, 2025