is a Data Source.
The Sequence Read Archive (SRA) is NCBI's public archive of high-throughput sequencing data and part of the International Nucleotide Sequence Database Collaboration, providing searchable access to raw sequence runs, metadata, cloud delivery, and download tooling.
genomics, biomedical, organisms
Warning: No license entered
Unknown
Unknown
Unknown
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| sra.portal | SRA Portal | sra | GraphicalInterface | http | Main SRA search and browse interface ... |
| sra.docs | SRA Documentation | docs | DocumentationProduct | http | Official SRA documentation covering s... |
| sra.run_selector | SRA Run Selector | study | GraphicalInterface | http | SRA Run Selector interface for export... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| archs4.human.gene_counts | ARCHS4 Human Gene Counts | human_gene_v2.latest.h5 (57.6 GB) | Product | hdf5 | had primary source | Latest human gene-level ARCHS4 expres... |
| archs4.mouse.gene_counts | ARCHS4 Mouse Gene Counts | mouse_gene_v2.latest.h5 (45.7 GB) | Product | hdf5 | had primary source | Latest mouse gene-level ARCHS4 expres... |
| archs4.human.transcript_counts | ARCHS4 Human Transcript Counts | human_transcript_v2.latest.h5 (178.8 GB) | Product | hdf5 | had primary source | Latest human transcript-level ARCHS4 ... |
| archs4.mouse.transcript_counts | ARCHS4 Mouse Transcript Counts | mouse_transcript_v2.latest.h5 (105.8 GB) | Product | hdf5 | had primary source | Latest mouse transcript-level ARCHS4 ... |
| archs4.zoo | ARCHS4 Zoo Downloads | zoo | Product | hdf5 | had primary source | Collection page for ARCHS4 Zoo downlo... |
SRA is the largest public repository of high-throughput sequencing data and serves as NCBI’s contribution to the INSDC sequence archive ecosystem. It supports archival storage, search, metadata export, toolkit-based download, cloud access patterns, and controlled-access handling for sensitive human data via dbGaP-linked workflows.
The ARCHS4 products listed here are downstream matrices built from SRA and GEO RNA-seq inputs. They remain attached as derived products because SRA is a direct upstream source of the sequence data used in those uniformly processed expression releases.
Created: May 21, 2026 | Last modified: May 22, 2026