is a Data Source.
STRING is a database of known and predicted protein-protein interactions. The interactions include direct (physical) and indirect (functional) associations derived from computational prediction, knowledge transfer between organisms, and interactions aggregated from other primary databases.
genomics, biomedical, proteomics
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| string.protein.links | STRING Protein Links | protein.links.v12.0.txt.gz (128.7 GB) | GraphProduct | tsv | Complete protein-protein interaction ... |
| string.protein.links.detailed | STRING Protein Links Detailed | protein.links.detailed.v12.0.txt.gz (189.6 GB) | GraphProduct | tsv | Detailed protein network data includi... |
| string.database | STRING Database Dump | network_schema.v12.0.sql.gz (262.2 GB) | GraphProduct | ❔ | Complete database dump containing all... |
| string.api | STRING REST API | help?subpage=api | ProgrammingInterface | ❔ | RESTful API for programmatic access t... |
| string.web | STRING Web Interface | string-db.org | GraphicalInterface | ❔ | Web interface for searching, visualiz... |
| clinicalkg.graph | CKG Graph Dump | ❔ | GraphProduct | mixed | Neo4j database dump of the Clinical K... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| ubkg.neo4j | UBKG Neo4j Docker Distribution | ubkg-downloads.xconsortia.org | GraphProduct | ❔ | Turnkey neo4j distributions that depl... |
| ubkg.csv | UBKG Ontology CSV Files | ubkg-downloads.xconsortia.org | GraphProduct | csv | Ontology CSV files that can be import... |
| spoke.graph | SPOKE Graph | ❔ | GraphProduct | ❔ | The SPOKE knowledge graph containing ... |
| bioteque.embeddings | Bioteque Embeddings | embeddings | Product | ❔ | Network embeddings of the Bioteque gr... |
| kg-monarch.graph | KGX Distribution of KG-Monarch | monarch-kg.tar.gz (220.2 MB) | GraphProduct | kgx | KGX Distribution of KG-Monarch |
| kg-monarch.graph.jsonl ⚠ | KGX JSON-L Distribution of KG-Monarch | monarch-kg.jsonl.tar.gz | GraphProduct | kgx-jsonl | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.rdf | RDF Distribution of KG-Monarch | monarch-kg.nt.gz (838.5 MB) | GraphProduct | rdfxml | RDF Distribution of KG-Monarch |
| kg-monarch.graph.neo4j ⚠ | Neo4j Dump of KG-Monarch | monarch-kg.neo4j.dump | GraphProduct | ❔ | Neo4j Dump of KG-Monarch |
| kg-monarch.graph.duckdb ⚠ | DuckDB database of KG-Monarch | monarch-kg.duckdb.gz | GraphProduct | ❔ | DuckDB database of KG-Monarch |
| automat.stringdb | stringdb_automat | 4ca5a0ce557e2c18 | GraphProduct | kgx-jsonl | STRING-DB Automat |
| pheknowlator.graph | PheKnowLator graph | knowledge_graphs?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&inv=1&invt=Ab5_1Q&project=pheknowlator | GraphProduct | owl | PheKnowLator graph files, including s... |