is a Data Source.
TarBase v9.0 is a comprehensive database of experimentally supported miRNA targets on protein-coding transcripts. It contains interactions identified via high-throughput methods (HITS-CLIP, PAR-CLIP, CLASH) and low-throughput experimental validation, all uniformly analyzed and manually curated with rich metadata.
genomics, biological systems
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| tarbase.portal | TarBase Portal | tarbasev9 | GraphicalInterface | http | Web portal for searching and browsing... |
| tarbase.interactions | Interactions Search | interactions | GraphicalInterface | http | Interactive search interface for quer... |
| tarbase.visualizations | Visualizations | visualizations | GraphicalInterface | http | Network visualization tool for assess... |
| tarbase.statistics | Statistics | statistics | GraphicalInterface | http | Statistics page showing database cont... |
| tarbase.textmining | Text-Mining Interface | textmining | GraphicalInterface | http | Text-mining interface for literature-... |
| tarbase.homo-sapiens | Homo sapiens Interactions | Homo_sapiens_TarBase-v9.tsv.gz (106.0 MB) | Product | tsv | Experimentally validated miRNA-gene i... |
| tarbase.mus-musculus ⚠ | Mus musculus Interactions | Mus_musculus_TarBase-v9.tsv.gz (15.7 MB) | Product | tsv | Experimentally validated miRNA-gene i... |
| tarbase.viral | Viral Species Interactions | Viral_species_TarBase-v9.tsv.gz (863.8 KB) | Product | tsv | Experimentally validated viral miRNA-... |
| tarbase.other-species | Other Species Interactions | Other_species_TarBase-v9.tsv.gz (161.0 KB) | Product | tsv | Experimentally validated miRNA-gene i... |
| tarbase.help ⚠ | Help Documentation | help | DocumentationProduct | http | Comprehensive help documentation with... |
| tarbase.downloads-doc ⚠ | Downloads Documentation | downloads | DocumentationProduct | http | Downloads page with file format speci... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| rnacentral.portal | RNAcentral Portal | rnacentral.org | GraphicalInterface | http | Web portal for searching and browsing... |
| rnacentral.api | RNAcentral REST API | api | ProgrammingInterface | http | REST API for programmatic access to R... |
| rnacentral.ftp | RNAcentral FTP Archive | RNAcentral | Product | http | FTP archive with current and archived... |
| rnacentral.public-db | RNAcentral Public Postgres Database | public-database | DataModelProduct | postgres | Public PostgreSQL database for direct... |
Created: September 09, 2025 | Last modified: October 27, 2025