is a Data Source.
TreatKB is a text-mined knowledge base of drug-treats-disease (treatment) relationships developed by the Rong Xu lab at Case Western Reserve University. Treatment pairs are extracted and combined from multiple lines of evidence, including MEDLINE/PubMed literature, the FDA Adverse Event Reporting System (FAERS), and ClinicalTrials.gov records, alongside a curated gold-standard set of drug-disease treatment pairs. The data are distributed as plain-text files from the Xu lab public data server. TreatKB has been used as a source to construct GP-KG.
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| treatkb.publication | TreatKB Method Publication | 1471-2105-14-181 | DocumentationProduct | ❔ | Peer-reviewed publication from the Xu... |
| treatkb.goldstandard | TreatKB gold-standard treatment pairs | drug_disease_goldstandard.txt (328.3 KB) | Product | txt | Curated gold-standard set of drug-dis... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| gp-kg.graph | GP-KG | GP_KG.txt (46.2 MB) | GraphProduct | txt | was derived from | GP_KG.txt |
TreatKB is a text-mined knowledge base of drug-treats-disease relationships built by the Rong Xu lab at Case Western Reserve University. It compiles treatment pairs by integrating evidence from multiple biomedical sources, including the FDA Adverse Event Reporting System (FAERS), FDA drug labels, MEDLINE/PubMed literature, and clinical trials.
TreatKB data are distributed as plain-text files from the Xu lab public data server at http://nlp.case.edu/public/data/treatKB/, including a curated gold-standard set of drug-disease treatment pairs and companion evidence-count files derived from MEDLINE, FAERS, and ClinicalTrials.gov. These downloads resolve live. There is no dedicated interactive portal, and the underlying method dates to 2013, but the files remain publicly accessible.
TreatKB has been used as a source dataset in the construction of GP-KG.
Created: June 18, 2026 | Last modified: July 02, 2026