is a Data Source.
TreeFam (Tree families database) is a database of phylogenetic trees of animal gene families. It provides curated and automatically generated gene trees, inferred orthologs and paralogs, and gene family annotations across a wide range of animal species.
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| treefam.site | TreeFam Website | www.treefam.org | Graphical Interface | http | Web interface for browsing and search... |
| treefam.downloads | TreeFam Downloads | download | Product | mixed | Bulk downloads of gene trees, alignme... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| genecards.web.interface | GeneCards Web Interface | www.genecards.org | Graphical Interface | http | had primary source | Web-based interface for searching and... |
| hcop.web | HCOP Search | hcop | Graphical Interface | http | was derived from | HCOP web search for orthologs of one ... |
| hcop.all-seven-column | HCOP All Species Orthologs (7 column) | human_all_hcop_seven_column.txt.gz (25.2 MB) | Mapping | tsv | was derived from | All human ortholog assertions from HC... |
| hcop.all-sixteen-column | HCOP All Species Orthologs (16 column) | human_all_hcop_sixteen_column.txt.gz (39.9 MB) | Mapping | tsv | was derived from | All human ortholog assertions from HC... |
| hcop.species-downloads | HCOP Per-species Bulk Downloads | tsv | Product | http | was derived from | HCOP bulk downloads page with pre-com... |
TreeFam (Tree families database) is a resource of phylogenetic trees for animal gene families. It combines automated pipelines with manual curation to provide reliable gene trees, from which orthology and paralogy relationships, gene family memberships, and functional annotations are derived.
Content includes:
GeneCards integrates gene family and phylogenetic information from TreeFam.
Created: June 17, 2026 | Last modified: September 23, 2026