is a Ontology.
It is part of the OBO Foundry collection.
An integrated cross-species anatomy ontology covering animals and bridging multiple species-specific ontologies
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| uberon.owl | Uberon | uberon.owl (94.0 MB) | Ontology | owl | core ontology |
| uberon.uberon-base.owl | Uberon base ontology | uberon-base.owl (54.6 MB) | Ontology | owl | Axioms defined within Uberon and to b... |
| uberon.uberon-basic.obo | Uberon basic | uberon-basic.obo (11.6 MB) | Ontology | obo | Uberon edition that excludes external... |
| uberon.collected-metazoan.owl | Uberon collected metazoan ontology | collected-metazoan.owl (271.7 MB) | Ontology | owl | Uberon plus all metazoan ontologies |
| uberon.composite-metazoan.owl | Uberon composite metazoan ontology | composite-metazoan.owl (247.8 MB) | Ontology | owl | Uberon and all metazoan ontologies wi... |
| uberon.composite-vertebrate.owl | Uberon composite vertebrate ontology | composite-vertebrate.owl (121.0 MB) | Ontology | owl | Uberon composite vertebrate ontology |
| uberon.kg-bioportal | UBERON KGX graph (KG-Bioportal) | UBERON.tar.gz (3.4 MB) | Graph | kgx | KGX TSV transform of Uber Anatomy Ont... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| ubkg.neo4j | UBKG Neo4j Docker Distribution | ubkg-downloads.xconsortia.org | Graph | neo4j | had primary source | Turnkey neo4j distributions that depl... |
| ubkg.csv | UBKG Ontology CSV Files | ubkg-downloads.xconsortia.org | Graph | csv | had primary source | Ontology CSV files that can be import... |
| alzkb.browser | AlzKB Graph Database Browser | login | Graphical Interface | http | had primary source | A browser interface for a knowledge g... |
| alzkb.data | AlzKB Data Release (Version 2.0.0) | v2.0.0 | Graph | mixed | had primary source | Memgraph data release for AlzKB. |
| unibiomap.links | UniBioMap Graph Links | unibiomap.links.csv (1.3 GB) | Graph | csv | had primary source | Core UniBioMap graph edges file. |
| unibiomap.auxs | UniBioMap Graph Auxiliaries | unibiomap.auxs.tsv (563.9 MB) | Graph | tsv | had primary source | Auxiliary UniBioMap graph annotations... |
| unibiomap.pred | UniBioMap Predicted Graph | unibiomap.pred.csv (2.3 GB) | Graph | csv | had primary source | Predicted UniBioMap graph edges with ... |
| unibiomap.pred.full | UniBioMap Predicted Graph (Full) | unibiomap.pred.full.csv (5.9 GB) | Graph | csv | had primary source | Full unfiltered UniBioMap predicted g... |
| spoke.graph | SPOKE Graph | data-tools | Graph | http | had primary source | The SPOKE knowledge graph containing ... |
| ibkh.graph | iBKH Knowledge Graph | ❔ | Graph | mixed | had primary source | The integrative Biomedical Knowledge ... |
| mechreponet.kg | MechRepoNet Knowledge Graph | publication | Product | mixed | had primary source | The MechRepoNet knowledge graph in it... |
| microbiomekg.api | MicrobiomeKG Plover TRAPI API | mbkp | Programming Interface | http | had primary source | Plover-hosted TRAPI web API for query... |
| biomarker.bkg.nodes.anatomy | BKG Anatomy Nodes | Anatomy.nodes.zip (332 B) | Graph | csv | had primary source | Nodes from Uber-Anatomy Ontology |
| pheknowlator.graph | PheKnowLator graph | knowledge_graphs?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&inv=1&invt=Ab5_1Q&project=pheknowlator | Graph | owl | had primary source | PheKnowLator graph files, including s... |
| rtx-kg2.graph.nodes | RTX-KG2.10.1c KGX JSONL Nodes | kg2c-2.10.1-v1.0-nodes.jsonl.gz (359.1 MB) | Graph | kgx-jsonl | had primary source | Nodes for KGX distribution of the RTX... |
| rtx-kg2.graph.edges | RTX-KG2.10.1c KGX JSONL Edges | kg2c-2.10.1-v1.0-edges.jsonl.gz (1.7 GB) | Graph | kgx-jsonl | had primary source | Edges for KGX distribution of the RTX... |
| rtx-kg2.neo4j | RTX-KG2 Neo4j | arax.ncats.io | Programming Interface | http | had primary source | Neo4j distribution of the RTX-KG2 as ... |
| rna-kg.kg.neo4j | RNA-KG Neo4j Dump | rnakgv20.dump (3.7 GB) | Graph | neo4j | had primary source | RNA-KG as a Neo4j Dump |
| rna-kg.kg.nodes | RNA-KG Nodes | nodes.csv (4.1 GB) | Graph | csv | had primary source | RNA-KG Nodes in CSV format |
| rna-kg.kg.edges | RNA-KG Edges | edges.csv (17.1 GB) | Graph | csv | had primary source | RNA-KG Edges in CSV format |
| efo.owl | EFO OWL | efo.owl (229.5 MB) | Ontology | owl | had primary source | The latest release of EFO in OWL format |
| efo.obo | EFO OBO | efo.obo (61.1 MB) | Ontology | obo | had primary source | The latest release of EFO in OBO format |
| drugmechdb.graph | DrugMechDB Graph Dataset | zenodo.8139357 | Graph | mixed | had primary source | Curated mechanistic drug–disease path... |
| hetionet.neo4j | Hetionet v1.0 Neo4j Database | browser | Graphical Interface | http | had primary source | Browser for complete Hetionet v1.0 gr... |
| hetionet.data.json | Hetionet v1.0 JSON | hetionet-v1.0.json.bz2 (131 B) | Graph | json | had primary source | Hetionet v1.0 in JSON format |
| hetionet.data.neo4j | Hetionet v1.0 Neo4j | hetionet-v1.0.db.tar.bz2 (132 B) | Graph | neo4j | had primary source | Hetionet v1.0 as a Neo4j database |
| hetionet.data.edges | Hetionet v1.0 edges (SIF) | hetionet-v1.0-edges.sif.gz (131 B) | Graph | sif | had primary source | Hetionet v1.0 as SIF edges |
| hetionet.data.nodes | Hetionet v1.0 nodes (TSV) | hetionet-v1.0-nodes.tsv (417.1 KB) | Graph | tsv | had primary source | Hetionet v1.0 as TSV nodes |
| hetionet.hetnetpy | hetnetpy | hetnetpy | Process | python | had primary source | Python package for creating, querying... |
| hetionet.search | Hetnet Connectivity Search | search | Graphical Interface | http | had primary source | Web application to search and explore... |
| medkg.site | MedKG Site | medkg | Graphical Interface | http | had primary source | Graphical interface for MedKG |
| pharmebinet.json | PharMeBINet JSON Release | content (3.4 GB) | Graph | json | was derived from | PharMeBINet V3 JSON release (Zenodo v... |
| pharmebinet.tsv | PharMeBINet TSV Release | content (3.5 GB) | Graph | tsv | was derived from | PharMeBINet V3 TSV release (Zenodo ve... |
| pharmebinet.graphml | PharMeBINet GraphML Release | content (3.8 GB) | Graph | mixed | was derived from | PharMeBINet V3 GraphML release (Zenod... |
| pharmebinet.neo4j | PharMeBINet Neo4j Database | content (7.7 GB) | Graph | neo4j | was derived from | PharMeBINet V3 Neo4j database release... |
| pharmebinet.neo4j.dump | PharMeBINet Neo4j Dump | content (7.5 GB) | Graph | neo4j | was derived from | PharMeBINet V3 Neo4j dump release (Ze... |
| hra.data | HRA Data Downloads | overview-data | Product | mixed | used | Downloadable data files including ana... |
| hra.knowledge-graph | Human Reference Atlas Knowledge Graph | kg | Graph | http | used | HRA Knowledge Graph documentation and... |
| metabokg.graph ⚠ | MetaboKG RDF Graph | MetaBoKG | Graph | mixed | used | RDF knowledge graph materialized by t... |
| metabokg.schema | MetaBoKG RDF Schema | Schema | Data Model | ttl | was informed by | Turtle schema files defining MetaBoKG... |
| acukg.csv | AcuKG CSV tables | AcuKG | Graph | csv | used | Source CSV tables for AcuKG, includin... |
| acukg.rdf | AcuKG RDF Turtle files | AcuKG_RDF | Graph | ttl | used | RDF Turtle representation of AcuKG re... |
| acukg.json | AcuKG JSON files | AcuKG_json | Graph | json | used | JSON representation of AcuKG relation... |
| biobtree.api | BioBTree REST API | api | Programming Interface | http | had primary source | REST API for searching identifiers an... |
| biobtree.graph.human-subgraph | BioBTree Knowledge Graph - Human Subgraph (KGX) | 20816742 | Graph | kgx | had primary source | Human-scoped, Neo4j-ready subgraph of... |
| biomarker.bkg.edges.anatomy | BKG Anatomy Edges | Anatomy.edges.zip (1.2 KB) | Graph | csv | had primary source | Biomarker to Anatomy relationships (d... |
| genomickb.graph | GenomicKB Graph Dump | genomickb-a-knowledgebase-for-the-human-genome | Graph | http | had primary source | GenomicKB 1.0 Neo4j Database Dump (Re... |
| gp-kg.graph | GP-KG | GP_KG.txt (46.2 MB) | Graph | txt | was derived from | GP_KG.txt |
| hra-kg.graph.ttl | HRA KG graph data, v2.2, Turtle format | graph.ttl (194.6 MB) | Graph | ttl | had primary source | The graph representation of the Human... |
| hra-kg.graph.json | HRA KG graph data, v2.2, JSON-LD format | graph.json (17.6 KB) | Graph | jsonld | had primary source | The graph representation of the Human... |
| hra-kg.graph.xml | HRA KG graph data, v2.2, RDF/XML format | graph.xml (176.5 MB) | Graph | rdfxml | had primary source | The graph representation of the Human... |
| hra-kg.graph.nt | HRA KG graph data, v2.2, N-Triples format | graph.nt (277.9 MB) | Graph | ntriples | had primary source | The graph representation of the Human... |
| hra-kg.graph.nq | HRA KG graph data, v2.2, N-Quads format | graph.nq (359.5 MB) | Graph | nquads | had primary source | The graph representation of the Human... |
| np-kg.graph.tsv | NP-KG TSV | NP-KG_v3.0.0.tsv?download=1 (1.0 GB) | Graph | tsv | had primary source | Merged KG with ontology-grounded KG a... |
| np-kg.graph.networkx | NP-KG gpickle | NP-KG_v3.0.0.gpickle?download=1 (892.7 MB) | Graph | mixed | had primary source | Merged KG with ontology-grounded KG a... |
| primekg.graph ⚠ | PrimeKG Full Dataset | 6180620 | Graph | csv | had primary source | The full PrimeKG dataset containing d... |
| sri-reference-kg.graph | SRI-Reference KG (KGX distribution) | monarch-kg.tar.gz (219.4 MB) | Graph | kgx | had primary source | KGX distribution of the SRI-Reference KG |
| nlm-ckn.graph | nlm-ckn-graph | nlm-ckn.org | Graph | http | was influenced by | The NLM-CKN knowledge graph of cellul... |
| spoke-okn.graph | SPOKE-OKN Graph | spoke.ucsf.edu | Graph | ttl | was influenced by | The SPOKE-OKN knowledge graph, an OKN... |
| ctd.anatomy | CTD Anatomy Vocabulary | CTD_anatomy.tsv.gz (317.3 KB) | Product | tsv | was derived from | CTD's anatomy vocabulary, a modified ... |
| service-kp.trapi | Service Provider TRAPI | Service%20Provider | Programming Interface | http | had primary source | TRAPI endpoint for the Service Provid... |
| babel.compendia | Babel Compendia | compendia | Product | json | had primary source | Babel compendia, one file per Biolink... |
| aism.owl | aism.owl | aism.owl (1.3 MB) | Ontology | owl | had primary source | Ontology for the Anatomy of the Insec... |
| aism.obo | aism.obo | aism.obo (875.5 KB) | Ontology | obo | had primary source | Ontology for the Anatomy of the Insec... |
| aism.json | aism.json | aism.json (907.6 KB) | Ontology | json | had primary source | Ontology for the Anatomy of the Insec... |
| amphx.owl | amphx.owl | amphx.owl (13.4 KB) | Ontology | owl | had primary source | The Amphioxus Development and Anatomy... |
| amphx.obo | amphx.obo | amphx.obo (8.4 KB) | Ontology | obo | had primary source | The Amphioxus Development and Anatomy... |
| chiro.owl | chiro.owl | chiro.owl (6.9 KB) | Ontology | owl | had primary source | CHEBI Integrated Role Ontology in OWL... |
| chiro.obo | chiro.obo | chiro.obo (3.3 KB) | Ontology | obo | had primary source | CHEBI Integrated Role Ontology in OBO... |
| cl.owl | Main CL OWL edition | cl.owl (62.8 MB) | Ontology | owl | had primary source | Complete ontology, plus inter-ontolog... |
| cl.obo | CL obo format edition | cl.obo (16.5 MB) | Ontology | obo | had primary source | Complete ontology, plus inter-ontolog... |
| cl.json | CL OBOGraph-JSON format edition | cl.json (38.0 MB) | Ontology | json | had primary source | Complete ontology, plus inter-ontolog... |
| cl.cl-basic.owl | Basic CL | cl-basic.owl (9.1 MB) | Ontology | owl | had primary source | Basic version, no inter-ontology axioms |
| cl.cl-basic.obo | Basic CL (OBO version) | cl-basic.obo (3.2 MB) | Ontology | obo | had primary source | Basic version, no inter-ontology axioms |
| cl.cl-basic.json | Basic CL (OBOGraph-JSON version) | cl-basic.json (5.8 MB) | Ontology | json | had primary source | Basic version, no inter-ontology axioms |
| clo.owl | clo.owl | clo.owl (2.0 MB) | Ontology | owl | had primary source | Cell Line Ontology in OWL format |
| clyh.owl | clyh.owl | clyh.owl (13.1 KB) | Ontology | owl | had primary source | Clytia hemisphaerica Development and ... |
| clyh.obo | clyh.obo | clyh.obo (9.4 KB) | Ontology | obo | had primary source | Clytia hemisphaerica Development and ... |
| colao.owl | colao.owl | colao.owl (160.7 KB) | Ontology | owl | had primary source | Coleoptera Anatomy Ontology (COLAO) i... |
| colao.obo | colao.obo | colao.obo (81.6 KB) | Ontology | obo | had primary source | Coleoptera Anatomy Ontology (COLAO) i... |
| cteno.owl | cteno.owl | cteno.owl (15.1 KB) | Ontology | owl | had primary source | Ctenophore Ontology in OWL format |
| ecao.owl | ecao.owl | ecao.owl (1.5 MB) | Ontology | owl | had primary source | The Echinoderm Anatomy and Developmen... |
| ecao.obo | ecao.obo | ecao.obo (978.5 KB) | Ontology | obo | had primary source | The Echinoderm Anatomy and Developmen... |
| ecocore.owl | ecocore.owl | ecocore.owl (1.2 MB) | Ontology | owl | had primary source | An ontology of core ecological entiti... |
| ecocore.obo | ecocore.obo | ecocore.obo (814.9 KB) | Ontology | obo | had primary source | An ontology of core ecological entiti... |
| ecto.owl | ecto.owl | ecto.owl (2.2 MB) | Ontology | owl | had primary source | Environmental conditions, treatments ... |
| ecto.obo | ecto.obo | ecto.obo (1.4 MB) | Ontology | obo | had primary source | Environmental conditions, treatments ... |
| ecto.json | ecto.json | ecto.json (1.6 MB) | Ontology | json | had primary source | Environmental conditions, treatments ... |
| envo.owl | main ENVO OWL release | envo.owl (800.7 KB) | Ontology | owl | had primary source | main ENVO OWL release |
| envo.json | ENVO in obographs JSON format | envo.json (638.3 KB) | Ontology | json | had primary source | ENVO in obographs JSON format |
| envo.obo | ENVO in OBO Format. May be lossy | envo.obo (581.3 KB) | Ontology | obo | had primary source | ENVO in OBO Format. May be lossy |
| envo.subsets.envo-basic.obo | OBO-Basic edition of ENVO | envo-basic.obo (412.6 KB) | Ontology | obo | had primary source | OBO-Basic edition of ENVO |
| envo.subsets.envoEmpo.owl | Earth Microbiome Project subset | envoEmpo.owl (18.6 KB) | Ontology | owl | had primary source | Earth Microbiome Project subset |
| envo.subsets.EnvO-Lite-GSC.obo | GSC Lite subset of ENVO | EnvO-Lite-GSC.obo (12.6 KB) | Ontology | obo | had primary source | GSC Lite subset of ENVO |
| foodon.owl | FoodOn ontology with import file references and over 9,000 food products | foodon.owl (2.7 MB) | Ontology | owl | had primary source | FoodOn ontology with import file refe... |
| fovt.owl | fovt.owl | fovt.owl (2.5 MB) | Ontology | owl | had primary source | FuTRES Ontology of Vertebrate Traits ... |
| fovt.obo | fovt.obo | fovt.obo (1.6 MB) | Ontology | obo | had primary source | FuTRES Ontology of Vertebrate Traits ... |
| genepio.owl | genepio.owl | genepio.owl (715.7 KB) | Ontology | owl | had primary source | Genomic Epidemiology Ontology in OWL ... |
| go.owl | GO (OWL edition) | go.owl (123.7 MB) | Ontology | owl | had primary source | The main ontology in OWL. This is sel... |
| go.obo | GO (OBO Format edition) | go.obo (34.9 MB) | Ontology | obo | had primary source | Equivalent to go.owl, in obo format |
| go.json | GO (JSON edition) | go.json | Ontology | json | had primary source | Equivalent to go.owl, in obograph jso... |
| go.extensions.go-plus.owl | GO-Plus | go-plus.owl (225.5 MB) | Ontology | owl | had primary source | The main ontology plus axioms connect... |
| go.extensions.go-plus.json | GO-Plus | go-plus.json | Ontology | json | had primary source | As go-plus.owl, in obographs json format |
| go.go-basic.obo | GO-Basic, Filtered, for use with legacy tools | go-basic.obo (30.6 MB) | Ontology | obo | had primary source | Basic version of the GO, filtered suc... |
| go.go-basic.json | GO-Basic, Filtered, for use with legacy tools (JSON) | go-basic.json | Ontology | json | had primary source | As go-basic.obo, in json format |
| go.snapshot.go.owl | GO (OWL edition), daily snapshot release | go.owl (123.9 MB) | Ontology | owl | had primary source | Equivalent to go.owl, but released da... |
| go.snapshot.go.obo | GO (OBO Format edition), daily snapshot release | go.obo (35.0 MB) | Ontology | obo | had primary source | Equivalent to go.owl, but released da... |
| go.extensions.go-taxon-groupings.owl | GO Taxon Groupings | go-taxon-groupings.owl | Ontology | owl | had primary source | Classes added to ncbitaxon for groupi... |
| hso.owl | hso.owl | hso.owl (135.0 KB) | Ontology | owl | had primary source | Health Surveillance Ontology in OWL f... |
| lepao.owl | lepao.owl | lepao.owl (138.5 KB) | Ontology | owl | had primary source | Lepidoptera Anatomy Ontology in OWL f... |
| lepao.obo | lepao.obo | lepao.obo (73.1 KB) | Ontology | obo | had primary source | Lepidoptera Anatomy Ontology in OBO f... |
| maxo.owl | maxo.owl | maxo.owl (15.7 MB) | Ontology | owl | had primary source | Medical Action Ontology in OWL format |
| maxo.obo | maxo.obo | maxo.obo (4.0 MB) | Ontology | obo | had primary source | Medical Action Ontology in OBO format |
| maxo.json | maxo.json | maxo.json (9.4 MB) | Ontology | json | had primary source | Medical Action Ontology in JSON format |
| mco.owl | mco.owl | mco.owl (754.0 KB) | Ontology | owl | had primary source | Microbial Conditions Ontology in OWL ... |
| mco.obo | mco.obo | mco.obo (400.2 KB) | Ontology | obo | had primary source | Microbial Conditions Ontology in OBO ... |
| mfmo.owl | mfmo.owl | mfmo.owl (15.4 KB) | Ontology | owl | had primary source | Mammalian Feeding Muscle Ontology in ... |
| ons.owl | ONS latest release | ons.owl (210.5 KB) | Ontology | owl | had primary source | ONS latest release |
| pcl.owl | pcl.owl | pcl.owl (159.8 MB) | Ontology | owl | had primary source | Provisional Cell Ontology in OWL format |
| pcl.obo | pcl.obo | pcl.obo (38.0 MB) | Ontology | obo | had primary source | Provisional Cell Ontology in OBO format |
| plana.owl | plana.owl | plana.owl (173.9 KB) | Ontology | owl | had primary source | planaria-ontology in OWL format |
| plana.obo | plana.obo | plana.obo (117.7 KB) | Ontology | obo | had primary source | planaria-ontology in OBO format |
| poro.owl | poro.owl | poro.owl (61.1 KB) | Ontology | owl | had primary source | Porifera Ontology in OWL format |
| poro.obo | poro.obo | poro.obo (53.3 KB) | Ontology | obo | had primary source | Porifera Ontology in OBO format |
| zp.owl | zp.owl | zp.owl (162.4 MB) | Ontology | owl | had primary source | Zebrafish Phenotype Ontology in OWL f... |
| zp.obo | zp.obo | zp.obo (15.1 MB) | Ontology | obo | had primary source | Zebrafish Phenotype Ontology in OBO f... |
An integrated cross-species anatomy ontology covering animals and bridging multiple species-specific ontologies
core ontology
URL: http://purl.obolibrary.org/obo/uberon.owl
Format: owl
Axioms defined within Uberon and to be used in imports for other ontologies
URL: http://purl.obolibrary.org/obo/uberon/uberon-base.owl
Format: owl
Uberon edition that excludes external ontologies and most relations
URL: http://purl.obolibrary.org/obo/uberon/uberon-basic.obo
Format: obo
Uberon plus all metazoan ontologies
URL: http://purl.obolibrary.org/obo/uberon/collected-metazoan.owl
Format: owl
Uberon and all metazoan ontologies with redundant species-specific terms removed
URL: http://purl.obolibrary.org/obo/uberon/composite-metazoan.owl
Format: owl
Uberon composite vertebrate ontology
URL: http://purl.obolibrary.org/obo/uberon/composite-vertebrate.owl
Format: owl
Domains: anatomy and development
Taxon: NCBITaxon:33208
This resource was automatically synchronized from the OBO Foundry registry.
Created: May 04, 2025 | Last modified: October 10, 2026