is a Data Source.
WikiPathways is an open, collaborative platform dedicated to the curation of biological pathways contributed, updated, and used by the research community.
pathways, genomics, biomedical
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| wikipathways.gpml | WikiPathways GPML | gpml | Product | xml | Pathways in Graphical Pathway Markup ... |
| wikipathways.gmt | WikiPathways GMT | gmt | Product | tsv | Pathways in Gene Matrix Transposed (G... |
| wikipathways.rdf | WikiPathways RDF | rdf | Product | ttl | Pathways in RDF (Resource Description... |
| wikipathways.sparql | WikiPathways SPARQL Endpoint | sparql.wikipathways.org | ProgrammingInterface | ❔ | SPARQL endpoint for querying WikiPath... |
| wikipathways.api | WikiPathways API | ui | ProgrammingInterface | ❔ | Web service API for programmatic acce... |
| wikipathways.web | WikiPathways Web Interface | www.wikipathways.org | GraphicalInterface | ❔ | The main web interface for browsing, ... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| spoke.graph | SPOKE Graph | ❔ | GraphProduct | ❔ | The SPOKE knowledge graph containing ... |
| ubkg.neo4j | UBKG Neo4j Docker Distribution | ubkg-downloads.xconsortia.org | GraphProduct | ❔ | Turnkey neo4j distributions that depl... |
| ubkg.csv | UBKG Ontology CSV Files | ubkg-downloads.xconsortia.org | GraphProduct | csv | Ontology CSV files that can be import... |
| alzkb.browser | AlzKB Graph Database Browser | login | GraphicalInterface | http | A browser interface for a knowledge g... |
| alzkb.data | AlzKB Data Release (Version 2.0.0) | v2.0.0 | GraphProduct | ❔ | Memgraph data release for AlzKB. |
| indra.cogex.code | INDRA CoGEx Build Code | indra_cogex | ProcessProduct | ❔ | INDRA CoGEx is a graph database integ... |
| rna-kg.kg.neo4j | RNA-KG Neo4j Dump | rnakgv20.dump (3.7 GB) | GraphProduct | neo4j | RNA-KG as a Neo4j Dump |
| rna-kg.kg.nodes | RNA-KG Nodes | nodes.csv (4.1 GB) | GraphProduct | csv | RNA-KG Nodes in CSV format |
| rna-kg.kg.edges | RNA-KG Edges | edges.csv (17.1 GB) | GraphProduct | csv | RNA-KG Edges in CSV format |