is a Data Source.
WormBase is an online biological database providing comprehensive genomic and biological information about C. elegans and related nematodes, including annotated genomes, gene structures, functional annotations, genetic maps, gene expression data, protein interactions, RNAi phenotypes, and curated literature.
genomics, organisms, anatomy and development, model organisms
infores:wormbase
Unknown
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| wormbase.portal | WormBase Web Portal | wormbase.org | Graphical Interface | http | Primary web portal for browsing and s... |
| wormbase.gbrowse | WormBase GBrowse | c_elegans | Graphical Interface | http | Genome browser for visualizing genes,... |
| wormbase.api | WormBase REST API | API-REST | Programming Interface | http | REST API providing programmatic acces... |
| wormbase.wormmine | WormMine | wormmine | Graphical Interface | http | WormMine InterMine instance for compl... |
| wormbase.textpresso | Textpresso | textpresso | Graphical Interface | http | Full-text search tool for querying C.... |
| wormbase.ftp | WormBase FTP Downloads | downloads.wormbase.org | Product | http | Download site providing bulk genome a... |
| wormbase.parasite | WormBase ParaSite | parasite.wormbase.org | Graphical Interface | http | Sub-portal hosting approximately 100 ... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| string.protein.links | STRING Protein Links | protein.links.v12.0.txt.gz (128.7 GB) | Graph | txt | had primary source | protein network data (full network, s... |
| string.protein.links.detailed | STRING Protein Links Detailed | protein.links.detailed.v12.0.txt.gz (189.6 GB) | Graph | txt | had primary source | protein network data (full network, i... |
| string.protein.links.full | STRING Protein Links Full | protein.links.full.v12.0.txt.gz (199.6 GB) | Graph | txt | had primary source | protein network data (full network, i... |
| string.protein.physical.links | STRING Protein Physical Links | protein.physical.links.v12.0.txt.gz (11.1 GB) | Graph | txt | had primary source | protein network data (physical subnet... |
| string.protein.physical.links.detailed | STRING Protein Physical Links Detailed | protein.physical.links.detailed.v12.0.txt.gz (13.8 GB) | Graph | txt | had primary source | protein network data (physical subnet... |
| string.protein.physical.links.full | STRING Protein Physical Links Full | protein.physical.links.full.v12.0.txt.gz (14.5 GB) | Graph | txt | had primary source | protein network data (physical subnet... |
| string.cog.links | STRING COG Links | COG.links.v12.0.txt.gz (176.8 MB) | Graph | txt | had primary source | association scores between orthologou... |
| string.cog.links.detailed | STRING COG Links Detailed | COG.links.detailed.v12.0.txt.gz (238.7 MB) | Graph | txt | had primary source | association scores (incl. subscores p... |
| string.database | STRING Database Network Schema | network_schema.v12.0.sql.gz (262.2 GB) | Graph | postgres | had primary source | full database, part II: the networks ... |
| genecards.web.interface | GeneCards Web Interface | www.genecards.org | Graphical Interface | http | had primary source | Web-based interface for searching and... |
| sri-reference-kg.graph | SRI-Reference KG (KGX distribution) | monarch-kg.tar.gz (219.4 MB) | Graph | kgx | had primary source | KGX distribution of the SRI-Reference KG |
WormBase is a comprehensive biological database and online resource for the biology and genome of the nematode model organism Caenorhabditis elegans and related nematode species. The database integrates genomic sequences, gene structures, functional annotations, genetic and physical maps, gene expression patterns, protein-protein interactions, RNAi phenotypes, mutant alleles, and curated literature.
WormBase primarily focuses on Caenorhabditis elegans but also includes data for:
WormBase comprises:
WormBase is a collaboration among the European Bioinformatics Institute, Wellcome Trust Sanger Institute, Ontario Institute for Cancer Research, Washington University in St. Louis, and California Institute of Technology. Supported by the National Institutes of Health (P41-HG002223) and the British Medical Research Council.
WormBase is a founding member of the Alliance of Genome Resources, which integrates data across model organism databases.
Created: October 30, 2025 | Last modified: September 23, 2026