is a Data Source.
Xenbase is the Xenopus model organism knowledgebase, a web-accessible resource that integrates all the diverse biological, genomic, genotype and phenotype data available from Xenopus research. It provides comprehensive data on Xenopus laevis and Xenopus tropicalis, including genome assemblies, gene expression data, anatomy information, phenotypes, and developmental biology resources.
anatomy and development, biomedical, genomics, organisms, phenotype
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infores:xenbase
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| xenbase.web-portal | Xenbase Web Portal | xenbase | GraphicalInterface | http | Web-based interface for exploring Xen... |
| xenbase.ftp-downloads | Xenbase Data Downloads | ftpDatafiles.jsp | Product | mixed | FTP site providing access to Xenopus ... |
| xenbase.genomes | Xenopus Genome Assemblies | xenbase | Product | fasta | Complete genome assemblies and gene m... |
| xenbase.jbrowse-laevis | X. laevis JBrowse Genome Browser | xl10_1 | GraphicalInterface | http | Genome browser for Xenopus laevis v10... |
| xenbase.jbrowse-tropicalis | X. tropicalis JBrowse Genome Browser | xt10_0 | GraphicalInterface | http | Genome browser for Xenopus tropicalis... |
| xenbase.blast | Xenbase BLAST Services | Xenla_10_1_Scaffolds | Product | http | BLAST search interface for Xenopus nu... |
| xenbase.expression-data | Gene Expression Data | geneExpressionSearch.do?method=display | Product | http | Curated gene expression data includin... |
| xenbase.phenotype-data | Phenotype and Mutant Data | searchPhenotype.do?method=display | Product | http | Comprehensive phenotype and mutant da... |
| xenbase.wiki | Xenbase Community Wiki | index.php?title=Xenopus_Wiki_-_Home | DocumentationProduct | http | Community wiki with protocols, method... |
| xenbase.apis | Xenbase APIs and Web Services | apis-links.jsp | ProgrammingInterface | http | REST APIs and web services for progra... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| kg-monarch.graph | KGX Distribution of KG-Monarch | monarch-kg.tar.gz (220.2 MB) | GraphProduct | kgx | KGX Distribution of KG-Monarch |
| kg-monarch.graph.jsonl | KGX JSON-L Distribution of KG-Monarch | monarch-kg.jsonl.tar.gz (301.0 MB) | GraphProduct | kgx-jsonl | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.rdf | RDF Distribution of KG-Monarch | monarch-kg.nt.gz (838.5 MB) | GraphProduct | rdfxml | RDF Distribution of KG-Monarch |
| kg-monarch.graph.neo4j | Neo4j Dump of KG-Monarch | monarch-kg.neo4j.dump (1.3 GB) | GraphProduct | ❔ | Neo4j Dump of KG-Monarch |
| kg-monarch.graph.duckdb | DuckDB database of KG-Monarch | monarch-kg.duckdb (6.4 GB) | GraphProduct | ❔ | DuckDB database of KG-Monarch |
| kg-monarch.graph.jsonl.edges | KGX JSON-L Distribution of KG-Monarch Edges | monarch-kg_edges.jsonl (14.2 GB) | GraphProduct | kgx-jsonl | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.jsonl.nodes | KGX JSON-L Distribution of KG-Monarch Nodes | monarch-kg_nodes.jsonl (1.1 GB) | GraphProduct | kgx-jsonl | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.neo4j.edges | Neo4j Dump of KG-Monarch Edges | monarch-kg_edges.neo4j.csv (4.1 GB) | GraphProduct | neo4j | Neo4j Dump of KG-Monarch Edges |
| kg-monarch.graph.neo4j.nodes | Neo4j Dump of KG-Monarch Nodes | monarch-kg_nodes.neo4j.csv (333.4 MB) | GraphProduct | neo4j | Neo4j Dump of KG-Monarch Nodes |
Created: August 13, 2025 | Last modified: October 09, 2025