is a Data Source.
Zebrafish Information Network, including the Zebrafish Anatomical Ontology
genomics, organisms, anatomy and development, model organisms
infores:zfin
Unknown
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| zfin.zfa | ZFA | zfa.owl (392.2 KB) | Ontology | owl | Zebrafish Anatomical Ontology (OWL) |
| zfin.downloads | ZFIN Data Downloads | downloads | Documentation | http | ZFIN data reports and bulk download p... |
| zfin.gene-to-phenotype | ZFIN clean gene to phenotype | phenoGeneCleanData_fish.txt (40.6 MB) | Product | tsv | Phenotype of Zebrafish Genes |
| zfin.gene-to-publication | ZFIN gene to publication | gene_publication.txt (37.7 MB) | Product | tsv | Phenotype of Zebrafish Genes |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| obo-db-ingest.zfin.obo | zfin OBO | zfin.obo (2.5 MB) | Product | obo | had primary source | zfin OBO |
| obo-db-ingest.zfin.owl | zfin OWL | zfin.owl.gz (4.3 MB) | Product | owl | had primary source | zfin OWL |
| obo-db-ingest.zfin.json | zfin OBO Graph JSON | zfin.json.gz (3.8 MB) | Product | json | had primary source | zfin OBO Graph JSON |
| obo-db-ingest.zfin.sssom.tsv | zfin SSSOM | zfin.sssom.tsv (365.8 KB) | Mapping | sssom | had primary source | zfin SSSOM |
| kg-monarch.graph | KGX Distribution of KG-Monarch | monarch-kg.tar.gz (220.2 MB) | Graph | kgx | had primary source | KGX Distribution of KG-Monarch |
| kg-monarch.graph.jsonl | KGX JSON-L Distribution of KG-Monarch | monarch-kg.jsonl.tar.gz (301.0 MB) | Graph | kgx-jsonl | had primary source | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.rdf | RDF Distribution of KG-Monarch | monarch-kg.nt.gz (838.5 MB) | Graph | rdfxml | had primary source | RDF Distribution of KG-Monarch |
| kg-monarch.graph.neo4j | Neo4j Dump of KG-Monarch | monarch-kg.neo4j.dump (1.3 GB) | Graph | neo4j | had primary source | Neo4j Dump of KG-Monarch |
| kg-monarch.graph.duckdb | DuckDB database of KG-Monarch | monarch-kg.duckdb (6.4 GB) | Graph | mixed | had primary source | DuckDB database of KG-Monarch |
| kg-monarch.graph.jsonl.edges | KGX JSON-L Distribution of KG-Monarch Edges | monarch-kg.jsonl.tar.gz (465.3 MB) | Graph | kgx-jsonl | had primary source | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.jsonl.nodes | KGX JSON-L Distribution of KG-Monarch Nodes | monarch-kg.jsonl.tar.gz (465.3 MB) | Graph | kgx-jsonl | had primary source | KGX JSON-Lines Distribution of KG-Mon... |
| kg-monarch.graph.neo4j.edges | Neo4j Dump of KG-Monarch Edges | monarch-kg_edges.neo4j.csv (4.1 GB) | Graph | neo4j | had primary source | Neo4j Dump of KG-Monarch Edges |
| kg-monarch.graph.neo4j.nodes | Neo4j Dump of KG-Monarch Nodes | monarch-kg_nodes.neo4j.csv (333.4 MB) | Graph | neo4j | had primary source | Neo4j Dump of KG-Monarch Nodes |
| rnacentral.portal | RNAcentral Portal | rnacentral.org | Graphical Interface | http | had primary source | Web portal for searching and browsing... |
| rnacentral.api | RNAcentral REST API | api | Programming Interface | http | had primary source | REST API for programmatic access to R... |
| rnacentral.ftp | RNAcentral FTP Archive | RNAcentral | Product | http | had primary source | FTP archive with current and archived... |
| rnacentral.public-db | RNAcentral Public Postgres Database | public-database | Data Model | postgres | had primary source | Public PostgreSQL database for direct... |
| genecards.model.organisms ⚠ | GeneCards Model Organism Data | www.genecards.org | Product | http | had primary source | Model organism data from FlyBase, SGD... |
| biogrid.identifiers | BIOGRID-IDENTIFIERS-LATEST.tab.zip | BIOGRID-IDENTIFIERS-LATEST.tab.zip | Mapping | tsv | had primary source | A single delimited text file format c... |
| obo-db-ingest.zfin.tsv | zfin Nodes TSV | zfin.tsv (1.8 MB) | Product | tsv | had primary source | zfin Nodes TSV |
| kg-alzheimers.graph ⚠ | KGX Distribution of KG-Alzheimers | kg-alzheimers.tar.gz (201.1 MB) | Graph | kgx | had primary source | KGX Distribution of KG-Alzheimers |
| sri-reference-kg.graph | SRI-Reference KG (KGX distribution) | monarch-kg.tar.gz (219.4 MB) | Graph | kgx | had primary source | KGX distribution of the SRI-Reference KG |
ZFIN
Created: March 09, 2025 | Last modified: September 23, 2026