Class: Ontology
An ontology is a formal representation of a set of concepts within a domain and the relationships between those concepts. It is used to reason about the properties of that domain and may be used in construction of a knowledge graph.
URI: kgr:Ontology
classDiagram
class Ontology
click Ontology href "Ontology/.html"
Resource <|-- Ontology
click Resource href "Resource/.html"
Ontology : activity_status
Ontology --> "0..1" ActivityStatusEnum : activity_status
click ActivityStatusEnum href "ActivityStatusEnum/.html"
Ontology : category
Ontology : collection
Ontology --> "*" CollectionEnum : collection
click CollectionEnum href "CollectionEnum/.html"
Ontology : contacts
Ontology --> "*" Contact : contacts
click Contact href "Contact/.html"
Ontology : creation_date
Ontology : curators
Ontology --> "*" Contact : curators
click Contact href "Contact/.html"
Ontology : description
Ontology : domains
Ontology --> "1..*" DomainEnum : domains
click DomainEnum href "DomainEnum/.html"
Ontology : fairsharing_id
Ontology : funding
Ontology --> "*" FundingSource : funding
click FundingSource href "FundingSource/.html"
Ontology : homepage_url
Ontology : id
Ontology : infores_id
Ontology : language
Ontology : last_modified_date
Ontology : layout
Ontology : license
Ontology --> "0..1" License : license
click License href "License/.html"
Ontology : name
Ontology : products
Ontology --> "*" Product : products
click Product href "Product/.html"
Ontology : publications
Ontology --> "*" Publication : publications
click Publication href "Publication/.html"
Ontology : repository
Ontology : synonyms
Ontology : tags
Ontology --> "*" TagEnum : tags
click TagEnum href "TagEnum/.html"
Ontology : taxon
Ontology : usages
Ontology --> "*" Usage : usages
click Usage href "Usage/.html"
Ontology : version
Ontology : warnings
Inheritance
- NamedThing
- Resource
- Ontology
- Resource
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| activity_status | 0..1 ActivityStatusEnum |
The status of the resource | Resource |
| name | 1 String |
The human-readable name of the resource | Resource |
| description | 0..1 String |
A description of the resource | Resource |
| homepage_url | 0..1 Uriorcurie |
The primary URL of the resource | Resource |
| repository | 0..1 Uriorcurie |
A main version control repository for the resource | Resource |
| license | 0..1 License |
The license of the resource | Resource |
| version | 0..1 String |
The version of the resource | Resource |
| language | 0..1 String |
The human language of the resource | Resource |
| contacts | * Contact |
The contact point(s) for the resource | Resource |
| curators | * Contact |
The curator(s) of the resource | Resource |
| products | * Product |
The products or representations of the resource | Resource |
| domains | 1..* DomainEnum |
The domain(s) that the resource is relevant to | Resource |
| tags | * TagEnum |
Tags associated with the resource | Resource |
| funding | * FundingSource |
The funding source(s) for the resource | Resource |
| publications | * Publication |
Publications associated with the resource | Resource |
| usages | * Usage |
The usage(s) of the resource | Resource |
| fairsharing_id | 0..1 String |
The FAIRsharing ID of the resource | Resource |
| infores_id | 0..1 String |
The Infores ID of the resource | Resource |
| taxon | * Uriorcurie |
The taxon or taxa that the resource is relevant to | Resource |
| synonyms | * String |
A list of synonyms for the resource | Resource |
| id | 1 String |
The identifier of an entity | NamedThing |
| category | 0..1 CategoryType |
The category of the entity | NamedThing |
| warnings | * String |
A list of warnings about an item to be displayed in the interface | NamedThing |
| collection | * CollectionEnum |
A collection of entries in the registry | NamedThing |
| layout | 1 String |
The layout of the entity | NamedThing |
| creation_date | 0..1 Datetime |
The date the entry was created | NamedThing |
| last_modified_date | 0..1 Datetime |
The date the entry was last modified | NamedThing |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | kgr:Ontology |
| native | kgr:Ontology |
LinkML Source
Direct
```yaml
name: Ontology
description: An ontology is a formal representation of a set of concepts within a
domain and the relationships between those concepts. It is used to reason about
the properties of that domain and may be used in construction of a knowledge graph.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
is_a: Resource
```
Induced
```yaml
name: Ontology
description: An ontology is a formal representation of a set of concepts within a
domain and the relationships between those concepts. It is used to reason about
the properties of that domain and may be used in construction of a knowledge graph.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
is_a: Resource
attributes:
activity_status:
name: activity_status
description: The status of the resource.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: activity_status
owner: Ontology
domain_of:
- Resource
range: ActivityStatusEnum
name:
name: name
description: The human-readable name of the resource.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: name
owner: Ontology
domain_of:
- Resource
- Product
range: string
required: true
description:
name: description
description: A description of the resource.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: description
owner: Ontology
domain_of:
- Resource
- Product
- Organization
- Usage
range: string
homepage_url:
name: homepage_url
description: The primary URL of the resource. This may be a link to download a
specific file, a base URL to an API, or a link to a graphical interface, but
it should preferentially be the main page documenting the resource.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: homepage_url
owner: Ontology
domain_of:
- Resource
- Organization
range: uriorcurie
repository:
name: repository
description: A main version control repository for the resource. Specific products
may have their own repositories.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: repository
owner: Ontology
domain_of:
- Resource
- Product
range: uriorcurie
license:
name: license
description: The license of the resource. Individual products may have their own
licenses.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: license
owner: Ontology
domain_of:
- Resource
- Product
range: License
inlined: true
version:
name: version
description: The version of the resource.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
exact_mappings:
- schema:version
- dcterms:hasVersion
rank: 1000
alias: version
owner: Ontology
domain_of:
- Resource
- StandardCompatibility
range: string
language:
name: language
description: The human language of the resource.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: language
owner: Ontology
domain_of:
- Resource
range: string
contacts:
name: contacts
description: The contact point(s) for the resource. May be an individual or organization.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: contacts
owner: Ontology
domain_of:
- Resource
- Product
range: Contact
multivalued: true
inlined: true
inlined_as_list: true
curators:
name: curators
description: The curator(s) of the resource. May be an individual or organization.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: curators
owner: Ontology
domain_of:
- Resource
- Product
range: Contact
multivalued: true
inlined: true
inlined_as_list: true
products:
name: products
description: The products or representations of the resource.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: products
owner: Ontology
domain_of:
- Resource
range: Product
multivalued: true
inlined: true
inlined_as_list: true
domains:
name: domains
description: The domain(s) that the resource is relevant to.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: domains
owner: Ontology
domain_of:
- Resource
range: DomainEnum
required: true
multivalued: true
tags:
name: tags
description: Tags associated with the resource.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: tags
owner: Ontology
domain_of:
- Resource
- Product
range: TagEnum
multivalued: true
funding:
name: funding
description: The funding source(s) for the resource.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: funding
owner: Ontology
domain_of:
- Resource
range: FundingSource
multivalued: true
publications:
name: publications
description: Publications associated with the resource.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: publications
owner: Ontology
domain_of:
- Resource
- Usage
range: Publication
multivalued: true
inlined: true
inlined_as_list: true
usages:
name: usages
description: The usage(s) of the resource.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: usages
owner: Ontology
domain_of:
- Resource
range: Usage
multivalued: true
inlined: true
inlined_as_list: true
fairsharing_id:
name: fairsharing_id
description: The FAIRsharing ID of the resource.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: fairsharing_id
owner: Ontology
domain_of:
- Resource
range: string
infores_id:
name: infores_id
description: The Infores ID of the resource. Do not include the 'infores' prefix.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: infores_id
owner: Ontology
domain_of:
- Resource
- Product
range: string
taxon:
name: taxon
description: The taxon or taxa that the resource is relevant to. This is preferably
an NCBI Taxonomy identifier, in CURIE format.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: taxon
owner: Ontology
domain_of:
- Resource
range: uriorcurie
multivalued: true
synonyms:
name: synonyms
description: A list of synonyms for the resource. These may include acronyms,
abbreviations, or other alternate names for the resource. They are not necessarily
unique across resources.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: synonyms
owner: Ontology
domain_of:
- Resource
range: string
multivalued: true
id:
name: id
description: The identifier of an entity. This is used to identify it within the
registry.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
slot_uri: dcterms:identifier
identifier: true
alias: id
owner: Ontology
domain_of:
- NamedThing
- Organization
range: string
required: true
category:
name: category
description: The category of the entity. This should be identical to its class
name.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
is_a: type
domain: NamedThing
alias: category
owner: Ontology
domain_of:
- NamedThing
- Contact
range: category_type
warnings:
name: warnings
description: A list of warnings about an item to be displayed in the interface.
These should primarily warn users about unavailable resources, broken links,
and other obstacles to using a resource.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: warnings
owner: Ontology
domain_of:
- NamedThing
range: string
multivalued: true
inlined: true
inlined_as_list: true
collection:
name: collection
description: A collection of entries in the registry. This is used to group related
entries together. This is multivalued to allow for multiple collections.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: collection
owner: Ontology
domain_of:
- NamedThing
range: CollectionEnum
multivalued: true
layout:
name: layout
description: The layout of the entity. This is used to determine how to display
the entity in the web interface. For resources, this is generally 'resource_detail'.
For products, this is generally 'product_detail'. If a value for this slot is
not specified, pages won't contain anything from their header metadata.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: layout
owner: Ontology
domain_of:
- NamedThing
- Organization
range: string
required: true
creation_date:
name: creation_date
description: The date the entry was created. This is used to determine the age
of the entity. It should be in ISO 8601 format, e.g., 2024-02-12T00:00:00Z.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: creation_date
owner: Ontology
domain_of:
- NamedThing
- Organization
range: datetime
last_modified_date:
name: last_modified_date
description: The date the entry was last modified. It should be in ISO 8601 format,
e.g., 2024-02-12T00:00:00Z.
from_schema: https://w3id.org/knowledge-graph-hub/kg_registry_schema
rank: 1000
alias: last_modified_date
owner: Ontology
domain_of:
- NamedThing
- Organization
range: datetime
```