is a Data Source.
BioModels is EMBL-EBI's repository of mathematical models of biological and biomedical systems. It holds manually curated models, which are checked to reproduce the results of their reference publication and annotated with cross-references to ontologies and databases such as GO, ChEBI, UniProt and Reactome, alongside non-curated submitted models and models generated automatically from pathway resources. Models are mainly encoded in SBML and distributed as COMBINE archives (OMEX). The models and their annotations are dedicated to the public domain under CC0.
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| biomodels.portal | BioModels Web Portal | biomodels | Graphical Interface | http | Web interface for searching, browsing... |
| biomodels.api | BioModels REST API | docs | Programming Interface | http | REST web services for searching BioMo... |
| biomodels.release.sbml ⚠ | BioModels Database Release 31 SBML Files | BioModels_Database-r31_pub-sbml_files.tar.bz2 (183.7 MB) | Product | sbml | Last numbered BioModels Database rele... |
| biomodels.rdf | BioModels RDF Export | BioModels-RDF-export-latest.tar.bz2 (28.3 MB) | Product | rdfxml | RDF export of BioModels models, one R... |
| biomodels.user-guide | BioModels User Guide | user-guide | Documentation | http | BioModels user guide covering model s... |
| biomodels.code | BioModels Source Code | EBI-BioModels | Process | mixed | Source code for the BioModels platfor... |
| biomodels.kg-bioportal | BIOMODELS KGX graph (KG-Bioportal) | BIOMODELS.tar.gz (12.8 MB) | Graph | kgx | KGX TSV transform of BioModels Ontolo... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| omicsdi.portal | OmicsDI Portal | www.omicsdi.org | Graphical Interface | http | had primary source | Web portal for searching and browsing... |
| omicsdi.api | OmicsDI API | index.html | Programming Interface | http | had primary source | Swagger-documented web service for pr... |
BioModels is a repository of mathematical models of biological processes, run by EMBL-EBI. It has three main kinds of model:
Models are mainly encoded in SBML, often with simulation descriptions in SED-ML, and are distributed as COMBINE archives (OMEX).
Models can be searched and downloaded through the web portal and the REST API. The FTP site holds the last numbered BioModels Database release (release 31, June 2017), an RDF export of the models from 2020, and other archives. Models added after 2017 are only available through the portal and the API.
The terms of use dedicate the BioModels dataset, including the encoded models and their annotations, to the public domain under CC0.
BioModels is also indexed by OmicsDI.
Created: October 04, 2026 | Last modified: October 05, 2026