is a Data Source.
ChEMBL is a manually curated database of bioactive molecules with drug-like properties. It brings together chemical, bioactivity and genomic data to aid the translation of genomic information into effective new drugs.
infores:chembl
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Email: chembl-help@ebi.ac.uk
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| chembl.site | ChEMBL Web Interface | chembl | Graphical Interface | http | Web interface for searching and explo... |
| chembl.api | ChEMBL API | docs | Programming Interface | http | RESTful API for accessing ChEMBL data... |
| chembl.postgres | ChEMBL PostgreSQL | latest | Product | postgres | PostgreSQL database dump of the compl... |
| chembl.mysql | ChEMBL MySQL | latest | Product | mysql | MySQL database dump of the complete C... |
| chembl.sqlite | ChEMBL SQLite | latest | Product | sqlite | SQLite database file containing the c... |
| chembl.sdf | ChEMBL SDF | latest | Product | sdf | Structure data files for all chemical... |
| chembl.rdf | ChEMBL RDF | latest | Product | ttl | RDF version of the ChEMBL database |
| chembl.sparql | ChEMBL RDF Download | latest | Product | ttl | RDF (Turtle) download of the ChEMBL d... |
| chembl.map_to_uniprot | ChEMBL map to UniProt | chembl_uniprot_mapping.txt (989.2 KB) | Mapping | txt | Mapping between chembl_35 target chem... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| spoke.graph | SPOKE Graph | data-tools | Graph | http | had primary source | The SPOKE knowledge graph containing ... |
| rtx-kg2.graph.nodes | RTX-KG2.10.1c KGX JSONL Nodes | kg2c-2.10.1-v1.0-nodes.jsonl.gz (359.1 MB) | Graph | kgx-jsonl | had primary source | Nodes for KGX distribution of the RTX... |
| rtx-kg2.graph.edges | RTX-KG2.10.1c KGX JSONL Edges | kg2c-2.10.1-v1.0-edges.jsonl.gz (1.7 GB) | Graph | kgx-jsonl | had primary source | Edges for KGX distribution of the RTX... |
| rtx-kg2.neo4j | RTX-KG2 Neo4j | arax.ncats.io | Programming Interface | http | had primary source | Neo4j distribution of the RTX-KG2 as ... |
| indra.cogex.code | INDRA CoGEx Build Code | indra_cogex | Process | python | had primary source | INDRA CoGEx is a graph database integ... |
| icees-kg.graph | KGX distribution of the ICEES Exposures KP | 1.5.0 | Graph | kgx-jsonl | had primary source | KGX distribution of the ICEES Exposur... |
| icees-kg.trapi | ICEES KG TRAPI API | icees-kg-trapi | Programming Interface | http | had primary source | Translator Reasoner API (TRAPI) endpo... |
| icees-kg.metadata | ICEES KG Metadata | metadata-metadata-get-icees-kg | Product | json | had primary source | Meta knowledge graph and metadata des... |
| ibkh.graph | iBKH Knowledge Graph | ❔ | Graph | mixed | had primary source | The integrative Biomedical Knowledge ... |
| translator.chembl.graph | Translator ChEMBL KGX Graph | latest | Graph | kgx-jsonl | had primary source | KGX JSONL graph package for ChEMBL di... |
| unibiomap.links | UniBioMap Graph Links | unibiomap.links.csv (1.3 GB) | Graph | csv | had primary source | Core UniBioMap graph edges file. |
| unibiomap.auxs | UniBioMap Graph Auxiliaries | unibiomap.auxs.tsv (563.9 MB) | Graph | tsv | had primary source | Auxiliary UniBioMap graph annotations... |
| unibiomap.pred | UniBioMap Predicted Graph | unibiomap.pred.csv (2.3 GB) | Graph | csv | had primary source | Predicted UniBioMap graph edges with ... |
| unibiomap.pred.full | UniBioMap Predicted Graph (Full) | unibiomap.pred.full.csv (5.9 GB) | Graph | csv | had primary source | Full unfiltered UniBioMap predicted g... |
| obo-db-ingest.chembl.compound.tsv | chembl.compound Nodes TSV | chembl.compound.tsv (401.6 KB) | Product | tsv | had primary source | chembl.compound Nodes TSV |
| obo-db-ingest.chembl.target.tsv | chembl.target Nodes TSV | chembl.target.tsv (254.1 KB) | Product | tsv | had primary source | chembl.target Nodes TSV |
| translator.translator_kg.graph | Translator Aggregate KGX Graph | latest | Graph | kgx-jsonl | had primary source | Aggregated KGX JSONL graph package co... |
| tcrd.database_download ⚠ | TCRD Database Downloads | TCRD | Product | mysql | was influenced by | MySQL database dump files containing ... |
| tcrd.api | Pharos API | api | Programming Interface | http | was influenced by | RESTful API providing programmatic ac... |
| tcrd.documentation ⚠ | TCRD Documentation | TCRD | Documentation | http | was influenced by | Comprehensive documentation describin... |
| biobtree.api | BioBTree REST API | api | Programming Interface | http | had primary source | REST API for searching identifiers an... |
| genecards.web.interface | GeneCards Web Interface | www.genecards.org | Graphical Interface | http | had primary source | Web-based interface for searching and... |
| biobtree.graph.human-subgraph | BioBTree Knowledge Graph - Human Subgraph (KGX) | 20816742 | Graph | kgx | had primary source | Human-scoped, Neo4j-ready subgraph of... |
| kg-covid-19.graph ⚠ | KG-COVID-19 graph | kg-covid-19 | Graph | kgx | had primary source | KGX nodes and edges for KG-COVID-19 |
| molecular-data-kp.graph.nodes | Nodes for Molecular Data KP | nodes.tsv (3.4 GB) | Graph | kgx | had primary source | KGX nodes for Molecular Data KP |
| molecular-data-kp.graph.edges | Edges for Molecular Data KP | edges.tsv (18.8 GB) | Graph | kgx | had primary source | KGX edges for Molecular Data KP |
| pharmdb.graph | PharmDB-K Graph | ❔ | Graph | http | had primary source | Integrated pharmacological knowledge ... |
| kg-enp.graph ⚠ | ENPKG RDF Knowledge Graph | graphdb | Graph | ttl | was influenced by | RDF knowledge graph of the Experiment... |
| ncatsgardkg.graph | NCATS GARD Knowledge Graph | processed | Graph | http | was influenced by | Integrated rare-disease knowledge gra... |
| spoke-okn.graph | SPOKE-OKN Graph | spoke.ucsf.edu | Graph | ttl | was influenced by | The SPOKE-OKN knowledge graph, an OKN... |
| pubchem.substances.asn | PubChem Substances ASN | ASN | Product | xml | had primary source | PubChem substance information in ASN.... |
| pubchem.substances.sdf | PubChem Substances SDF | SDF | Product | sdf | had primary source | PubChem substance information in SDF ... |
| micromap.api | MicroMap API | docs | Programming Interface | http | was derived from | REST API and MCP server over the prod... |
ChEMBL is a manually curated database of bioactive molecules with drug-like properties. It brings together chemical, bioactivity and genomic data to aid the translation of genomic information into effective new drugs.
The database contains detailed information on:
ChEMBL is widely used in drug discovery, pharmacology research, chemical biology, and medicinal chemistry. The database undergoes regular updates, with new data releases typically occurring 3-4 times per year.
Created: March 09, 2025 | Last modified: September 23, 2026