is a Data Source.
ChEMBL is a manually curated database of bioactive molecules with drug-like properties. It brings together chemical, bioactivity and genomic data to aid the translation of genomic information into effective new drugs.
chemistry and biochemistry
infores:chembl
Unknown
Email: chembl-help@ebi.ac.uk
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| chembl.site | ChEMBL Web Interface | chembl | GraphicalInterface | ❔ | Web interface for searching and explo... |
| chembl.api | ChEMBL API | docs | ProgrammingInterface | ❔ | RESTful API for accessing ChEMBL data... |
| chembl.postgres | ChEMBL PostgreSQL | latest | Product | postgres | PostgreSQL database dump of the compl... |
| chembl.mysql | ChEMBL MySQL | latest | Product | mysql | MySQL database dump of the complete C... |
| chembl.sqlite | ChEMBL SQLite | latest | Product | sqlite | SQLite database file containing the c... |
| chembl.sdf | ChEMBL SDF | latest | Product | sdf | Structure data files for all chemical... |
| chembl.rdf | ChEMBL RDF | latest | Product | ttl | RDF version of the ChEMBL database |
| chembl.sparql | ChEMBL SPARQL | sparql | ProgrammingInterface | ❔ | SPARQL endpoint for the ChEMBL RDF data |
| chembl.map_to_uniprot | ChEMBL map to UniProt | chembl_uniprot_mapping.txt (989.2 KB) | MappingProduct | ❔ | Mapping between chembl_35 target chem... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| spoke.graph | SPOKE Graph | ❔ | GraphProduct | ❔ | had primary source | The SPOKE knowledge graph containing ... |
| rtx-kg2.graph.nodes | RTX-KG2.10.1c KGX JSONL Nodes | kg2c-2.10.1-v1.0-nodes.jsonl.gz (359.1 MB) | GraphProduct | kgx-jsonl | had primary source | Nodes for KGX distribution of the RTX... |
| rtx-kg2.graph.edges | RTX-KG2.10.1c KGX JSONL Edges | kg2c-2.10.1-v1.0-edges.jsonl.gz (1.7 GB) | GraphProduct | kgx-jsonl | had primary source | Edges for KGX distribution of the RTX... |
| rtx-kg2.neo4j | RTX-KG2 Neo4j | arax.ncats.io | ProgrammingInterface | ❔ | had primary source | Neo4j distribution of the RTX-KG2 as ... |
| indra.cogex.code | INDRA CoGEx Build Code | indra_cogex | ProcessProduct | ❔ | had primary source | INDRA CoGEx is a graph database integ... |
| icees-kg.graph | KGX distribution of the ICEES Exposures KP | 1.5.0 | GraphProduct | kgx-jsonl | had primary source | KGX distribution of the ICEES Exposur... |
| icees-kg.trapi | ICEES KG TRAPI API | icees-kg-trapi | ProgrammingInterface | http | had primary source | Translator Reasoner API (TRAPI) endpo... |
| icees-kg.metadata | ICEES KG Metadata | metadata-metadata-get-icees-kg | Product | json | had primary source | Meta knowledge graph and metadata des... |
| ibkh.graph | iBKH Knowledge Graph | ❔ | GraphProduct | ❔ | had primary source | The integrative Biomedical Knowledge ... |
| translator.chembl.graph | Translator ChEMBL KGX Graph | latest | GraphProduct | kgx-jsonl | had primary source | KGX JSONL graph package for ChEMBL di... |
| unibiomap.links | UniBioMap Graph Links | unibiomap.links.csv (1.3 GB) | GraphProduct | csv | had primary source | Core UniBioMap graph edges file. |
| unibiomap.auxs | UniBioMap Graph Auxiliaries | unibiomap.auxs.tsv (563.9 MB) | GraphProduct | tsv | had primary source | Auxiliary UniBioMap graph annotations... |
| unibiomap.pred | UniBioMap Predicted Graph | unibiomap.pred.csv (2.3 GB) | GraphProduct | csv | had primary source | Predicted UniBioMap graph edges with ... |
| unibiomap.pred.full | UniBioMap Predicted Graph (Full) | unibiomap.pred.full.csv (5.9 GB) | GraphProduct | csv | had primary source | Full unfiltered UniBioMap predicted g... |
| obo-db-ingest.chembl.compound.tsv | chembl.compound Nodes TSV | chembl.compound.tsv (401.6 KB) | Product | tsv | had primary source | chembl.compound Nodes TSV |
| obo-db-ingest.chembl.target.tsv | chembl.target Nodes TSV | chembl.target.tsv (254.1 KB) | Product | tsv | had primary source | chembl.target Nodes TSV |
| translator.translator_kg.graph | Translator Aggregate KGX Graph | latest | GraphProduct | kgx-jsonl | had primary source | Aggregated KGX JSONL graph package co... |
ChEMBL is a manually curated database of bioactive molecules with drug-like properties. It brings together chemical, bioactivity and genomic data to aid the translation of genomic information into effective new drugs.
The database contains detailed information on:
ChEMBL is widely used in drug discovery, pharmacology research, chemical biology, and medicinal chemistry. The database undergoes regular updates, with new data releases typically occurring 3-4 times per year.
Created: March 09, 2025 | Last modified: February 18, 2026