is a Data Model or Ontology.
The Cell Ontology (CL) is a structured controlled vocabulary for cell types in animals. It serves as a comprehensive resource for model organism and bioinformatics databases, with over 2,700 cell type classes and rich integration with other biomedical ontologies.
anatomy and development, biomedical
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| cl.owl | CL OWL | cl.owl (59.9 MB) | DataModelProduct | owl | The latest release of CL in OWL forma... |
| cl.obo | CL OBO | cl.obo (15.2 MB) | DataModelProduct | obo | The latest release of CL in OBO forma... |
| cl.json | CL JSON | cl.json (35.3 MB) | DataModelProduct | json | The latest release of CL in OBOGraph-... |
| cl.basic.owl | CL Basic OWL | cl-basic.owl (7.0 MB) | DataModelProduct | owl | Basic version of CL with no inter-ont... |
| cl.basic.obo | CL Basic OBO | cl-basic.obo (2.3 MB) | DataModelProduct | obo | Basic version of CL with no inter-ont... |
| drugmechdb.graph | DrugMechDB Graph Dataset | zenodo.8139357 | GraphProduct | mixed | Curated mechanistic drug–disease path... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| ubkg.neo4j | UBKG Neo4j Docker Distribution | ubkg-downloads.xconsortia.org | GraphProduct | ❔ | Turnkey neo4j distributions that depl... |
| ubkg.csv | UBKG Ontology CSV Files | ubkg-downloads.xconsortia.org | GraphProduct | csv | Ontology CSV files that can be import... |
| spoke.graph | SPOKE Graph | ❔ | GraphProduct | ❔ | The SPOKE knowledge graph containing ... |
| efo.owl | EFO OWL | efo.owl (229.5 MB) | DataModelProduct | owl | The latest release of EFO in OWL format |
| efo.obo | EFO OBO | efo.obo (61.1 MB) | DataModelProduct | obo | The latest release of EFO in OBO format |
| mechreponet.kg | MechRepoNet Knowledge Graph | publication | ❔ | The MechRepoNet knowledge graph in it... | |
| pheknowlator.graph | PheKnowLator graph | knowledge_graphs?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&inv=1&invt=Ab5_1Q&project=pheknowlator | GraphProduct | owl | PheKnowLator graph files, including s... |
| rna-kg.kg.neo4j | RNA-KG Neo4j Dump | rnakgv20.dump (3.7 GB) | GraphProduct | neo4j | RNA-KG as a Neo4j Dump |
| rna-kg.kg.nodes | RNA-KG Nodes | nodes.csv (4.1 GB) | GraphProduct | csv | RNA-KG Nodes in CSV format |
| rna-kg.kg.edges | RNA-KG Edges | edges.csv (17.1 GB) | GraphProduct | csv | RNA-KG Edges in CSV format |
Created: July 22, 2025 | Last modified: July 22, 2025