is a Data Source.
A genome browser for vertebrate genomes that supports research in comparative genomics, evolution, sequence variation, and transcriptional regulation
genomics
infores:ensembl
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| ensembl.browser | Ensembl Genome Browser | www.ensembl.org | GraphicalInterface | ❔ | A web-based platform for browsing and... |
| ensembl.biomart | BioMart | martview | GraphicalInterface | ❔ | A data mining tool that allows extrac... |
| ensembl.vep | Variant Effect Predictor (VEP) | vep | ProcessProduct | ❔ | A tool to analyze variants and predic... |
| ensembl.blast | BLAST/BLAT | Blast | ProcessProduct | ❔ | Tool to search Ensembl genomes for DN... |
| ensembl.api.perl | Ensembl Perl API | Ensembl | ProgrammingInterface | ❔ | Programmatic access to all Ensembl da... |
| ensembl.api.rest | Ensembl REST API | rest.ensembl.org | ProgrammingInterface | ❔ | RESTful API that allows access to Ens... |
| ncbigene.gene2ensembl | Gene to Ensembl Mapping | gene2ensembl.gz (269.7 MB) | MappingProduct | tsv | Gene to Ensembl mapping data providin... |
| omim.mim2gene | OMIM mim2gene.txt | mim2gene.txt (951.6 KB) | MappingProduct | tsv | Public mapping of MIM numbers to NCBI... |
| rnacentral.portal | RNAcentral Portal | rnacentral.org | GraphicalInterface | http | Web portal for searching and browsing... |
| rnacentral.api | RNAcentral REST API | api | ProgrammingInterface | http | REST API for programmatic access to R... |
| rnacentral.ftp | RNAcentral FTP Archive | RNAcentral | Product | http | FTP archive with current and archived... |
| rnacentral.public-db | RNAcentral Public Postgres Database | public-database | DataModelProduct | postgres | Public PostgreSQL database for direct... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| rtx-kg2.graph.nodes | RTX-KG2.10.1c KGX JSONL Nodes | kg2c-2.10.1-v1.0-nodes.jsonl.gz (359.1 MB) | GraphProduct | kgx-jsonl | Nodes for KGX distribution of the RTX... |
| rtx-kg2.graph.edges | RTX-KG2.10.1c KGX JSONL Edges | kg2c-2.10.1-v1.0-edges.jsonl.gz (1.7 GB) | GraphProduct | kgx-jsonl | Edges for KGX distribution of the RTX... |
| rtx-kg2.neo4j | RTX-KG2 Neo4j | arax.ncats.io | ProgrammingInterface | ❔ | Neo4j distribution of the RTX-KG2 as ... |
| pheknowlator.graph | PheKnowLator graph | knowledge_graphs?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&inv=1&invt=Ab5_1Q&project=pheknowlator | GraphProduct | owl | PheKnowLator graph files, including s... |
| rna-kg.kg.neo4j | RNA-KG Neo4j Dump | rnakgv20.dump (3.7 GB) | GraphProduct | neo4j | RNA-KG as a Neo4j Dump |
| rna-kg.kg.nodes | RNA-KG Nodes | nodes.csv (4.1 GB) | GraphProduct | csv | RNA-KG Nodes in CSV format |
| rna-kg.kg.edges | RNA-KG Edges | edges.csv (17.1 GB) | GraphProduct | csv | RNA-KG Edges in CSV format |
| epigraphdb.graph | EpiGraphDB Graph Database | graph-database | GraphProduct | neo4j | Integrated graph knowledge base combi... |
| aop-db.data | AOP-DB Data | adverse-outcome-pathway-database-aop-db-version-2 | Product | ❔ | The EPA has developed the Adverse Out... |