is an Aggregator.
Expression Atlas is EMBL-EBI's open science resource that provides information about gene and protein expression across species and biological conditions. It aggregates, processes, and visualizes gene expression data from thousands of manually curated experiments spanning multiple species, tissue types, developmental stages, diseases, and experimental perturbations. Both bulk RNA-sequencing and single-cell RNA-sequencing datasets are supported, offering baseline expression profiles and differential gene expression analysis results through standardized processing pipelines.
genomics, biological systems, organisms
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| expressionatlas.portal | Expression Atlas Portal | home | GraphicalInterface | http | Main web portal for searching and exp... |
| expressionatlas.single-cell | Single Cell Expression Atlas | sc | GraphicalInterface | http | Single Cell Expression Atlas portal f... |
| expressionatlas.api | Expression Atlas REST API | api.html | ProgrammingInterface | http | REST API for programmatic access to e... |
| expressionatlas.ftp-bulk | Expression Atlas FTP (Bulk Data) | experiments | Product | http | FTP archive containing processed expr... |
| expressionatlas.ftp-single-cell ⚠ | Expression Atlas FTP (Single Cell Data) | single-cell | Product | http | FTP archive containing single-cell RN... |
| expressionatlas.experiment-downloads | Expression Atlas Experiment Downloads | download | Product | tsv | Individual experiment data downloads ... |
| expressionatlas.r-objects ⚠ | Expression Atlas R Data Objects | r-data-objects.html | Product | mixed | Normalized gene expression data and r... |
| expressionatlas.baseline-summary | Expression Atlas Baseline Summary | experiments | Product | tsv | Baseline expression summary data acro... |
| expressionatlas.differential-results | Expression Atlas Differential Results | experiments?experimentType=differential | Product | tsv | Differential gene expression results ... |
| expressionatlas.documentation | Expression Atlas Help Documentation | index.html | DocumentationProduct | http | Comprehensive help documentation cove... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| rnacentral.portal | RNAcentral Portal | rnacentral.org | GraphicalInterface | http | Web portal for searching and browsing... |
| rnacentral.api | RNAcentral REST API | api | ProgrammingInterface | http | REST API for programmatic access to R... |
| rnacentral.ftp | RNAcentral FTP Archive | RNAcentral | Product | http | FTP archive with current and archived... |
| rnacentral.public-db | RNAcentral Public Postgres Database | public-database | DataModelProduct | postgres | Public PostgreSQL database for direct... |
Created: September 09, 2025 | Last modified: October 09, 2025