is a Data Source.
The PRIDE (PRoteomics IDEntifications) Archive is EMBL-EBI's public repository for mass spectrometry-based proteomics data and a founding member of the ProteomeXchange consortium. It stores raw files, peptide and protein identifications, quantification results and experimental metadata for submitted datasets, each identified by a ProteomeXchange accession (PXD). The archive held 41,886 public projects when checked on 2026-10-04.
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| pride.portal | PRIDE Archive Web Portal | archive | Graphical Interface | http | PRIDE Archive web portal for searchin... |
| pride.api | PRIDE Archive REST API | index.html | Programming Interface | http | PRIDE Archive REST API (version 3) fo... |
| pride.ftp | PRIDE Archive FTP | archive | Product | mixed | FTP archive of all public PRIDE datas... |
| pride.docs | PRIDE Documentation | documentationpage | Documentation | http | PRIDE documentation covering data sub... |
| pride.code | PRIDE Archive Source Code | PRIDE-Archive | Process | mixed | GitHub organization holding the sourc... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| omicsdi.portal | OmicsDI Portal | www.omicsdi.org | Graphical Interface | http | had primary source | Web portal for searching and browsing... |
| omicsdi.api | OmicsDI API | index.html | Programming Interface | http | had primary source | Swagger-documented web service for pr... |
| human-proteome-map.raw-data | Human Proteome Map Raw Data (PXD000561) | PXD000561 | Product | mixed | was influenced by | Raw LC-MS/MS data for the draft map o... |
| proteomexchange.proteomecentral | ProteomeCentral | proteomecentral.proteomexchange.org | Graphical Interface | http | had primary source | ProteomeCentral, the central index of... |
| proteomexchange.dataset-list | ProteomeXchange Dataset Listing | GetDataset?outputMode=tsv | Product | tsv | had primary source | Full tab-separated listing of all pub... |
| proteomexchange.dataset-records | ProteomeXchange Dataset Records | GetDataset?ID=PXD000001&outputMode=XML | Product | xml | had primary source | Per-dataset ProteomeXchange announcem... |
PRIDE (PRoteomics IDEntifications) is EMBL-EBI’s repository for mass spectrometry-based proteomics data. It was started in 2004 and is a founding member of the ProteomeXchange consortium, which coordinates proteomics data submission across repositories such as PRIDE, MassIVE, PeptideAtlas, jPOST and iProX.
Each public dataset has a ProteomeXchange accession (PXD followed by six digits). Datasets include raw instrument files, processed peak lists, search engine results, quantification tables and sample metadata, often in SDRF format. On 2026-10-04 the REST API reported 41,886 public projects.
The PRIDE site falls under the EMBL-EBI Terms of Use. Each dataset also carries its own license in its metadata. Of the 100 most recently submitted projects checked on 2026-10-04, 81 listed “EBI terms of use” and 19 listed “Creative Commons Public Domain (CC0)”.
Created: October 04, 2026 | Last modified: October 04, 2026