is a Data Source.
Rfam is a comprehensive database of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models. The database provides curated information for over 4,000 non-coding RNA families and is widely used for RNA annotation, genome analysis, and as training data for machine learning models. Release 15.0 includes expanded coverage with 26,106 genomes, improved 3D structure integration, complete microRNA synchronization with miRBase, enhanced Gene Ontology annotations, and comprehensive viral RNA families.
genomics, biological systems
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| rfam.portal | Rfam Web Portal | rfam.org | GraphicalInterface | http | Web portal for searching and browsing... |
| rfam.api | Rfam REST API | api | ProgrammingInterface | http | REST API for programmatic access to R... |
| rfam.ftp | Rfam FTP Archive | CURRENT | Product | http | FTP archive with covariance models, s... |
| rfam.public-db | Rfam Public MySQL Database | database.html | DataModelProduct | mysql | Public MySQL database for direct SQL ... |
| rfam.cm-models | Rfam Covariance Models | Rfam.cm.gz (43.0 MB) | Product | txt | Covariance models for all RNA familie... |
| rfam.seed-alignments | Rfam SEED Alignments | Rfam.seed.gz (4.8 MB) | Product | stockholm | SEED alignments for all RNA families ... |
| rfam.full-alignments | Rfam FULL Alignments | full_alignments | Product | txt | FULL alignments for all RNA families |
| rfam.fasta | Rfam FASTA Sequences | fasta_files | Product | fasta | FASTA format sequences for all RNA fa... |
| rfam.pdb-mappings | Rfam PDB Mappings | pdb_full_region.txt.gz (174.9 KB) | MappingProduct | txt | PDB structure mappings showing RNA fa... |
| rfam.docs | Rfam Documentation | docs.rfam.org | DocumentationProduct | http | Comprehensive documentation for Rfam ... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| rnacentral.portal | RNAcentral Portal | rnacentral.org | GraphicalInterface | http | Web portal for searching and browsing... |
| rnacentral.api | RNAcentral REST API | api | ProgrammingInterface | http | REST API for programmatic access to R... |
| rnacentral.ftp | RNAcentral FTP Archive | RNAcentral | Product | http | FTP archive with current and archived... |
| rnacentral.public-db | RNAcentral Public Postgres Database | public-database | DataModelProduct | postgres | Public PostgreSQL database for direct... |
Created: October 29, 2025 | Last modified: October 29, 2025