biological systems, proteomics, biomedical
infores:uniprot
Unknown
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| uniprot.swissprot.xml | Reviewed (Swiss-Prot) XML | uniprot_sprot.xml.gz (883.0 MB) | Product | kgx | The Reviewed (Swiss-Prot) section of ... |
| uniprot.swissprot.fasta | Reviewed (Swiss-Prot) FASTA | uniprot_sprot.fasta.gz (88.8 MB) | Product | fasta | The Reviewed (Swiss-Prot) section of ... |
| uniprot.trembl.xml | Unreviewed (TrEMBL) XML | uniprot_trembl.xml.gz (226.7 GB) | Product | xml | The Unreviewed (TrEMBL) section of Un... |
| uniprot.trembl.fasta | Unreviewed (TrEMBL) FASTA | uniprot_trembl.fasta.gz (59.2 GB) | Product | fasta | The Unreviewed (TrEMBL) section of Un... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| kg-microbe.graph.uniprot | KG-Microbe UniProt microbe transform | KGMicrobe-transformed-uniprot-microbes-20240924.tar.gz (4.5 GB) | GraphProduct | kgx | had primary source | UniProt proteins from microbes, as gr... |
| pombase.genes-products ⚠ | PomBase gene names and products | gene_IDs_names_products.tsv | Product | tsv | had primary source | Tab-delimited file of systematic ID, ... |
| pombase.to-uniprot | PomBase to UniProt map | PomBase2UniProt.tsv (27.0 KB) | MappingProduct | tsv | had primary source | Tab-delimited file with the PomBase s... |
| chembl.map_to_uniprot | ChEMBL map to UniProt | chembl_uniprot_mapping.txt (989.2 KB) | MappingProduct | ❔ | had primary source | Mapping between chembl_35 target chem... |
| oma.mapping.uniprot ⚠ | OMA to UniProt Mapping | oma-uniprot.txt.gz | MappingProduct | tsv | had primary source | Mapping of OMA identifiers to UniProt... |
| spoke.graph | SPOKE Graph | ❔ | GraphProduct | ❔ | had primary source | The SPOKE knowledge graph containing ... |
| ubkg.neo4j | UBKG Neo4j Docker Distribution | ubkg-downloads.xconsortia.org | GraphProduct | ❔ | had primary source | Turnkey neo4j distributions that depl... |
| ubkg.csv | UBKG Ontology CSV Files | ubkg-downloads.xconsortia.org | GraphProduct | csv | had primary source | Ontology CSV files that can be import... |
| rtx-kg2.graph.nodes | RTX-KG2.10.1c KGX JSONL Nodes | kg2c-2.10.1-v1.0-nodes.jsonl.gz (359.1 MB) | GraphProduct | kgx-jsonl | had primary source | Nodes for KGX distribution of the RTX... |
| rtx-kg2.graph.edges | RTX-KG2.10.1c KGX JSONL Edges | kg2c-2.10.1-v1.0-edges.jsonl.gz (1.7 GB) | GraphProduct | kgx-jsonl | had primary source | Edges for KGX distribution of the RTX... |
| rtx-kg2.neo4j | RTX-KG2 Neo4j | arax.ncats.io | ProgrammingInterface | ❔ | had primary source | Neo4j distribution of the RTX-KG2 as ... |
| disgenet.data | DisGeNET Data | www.disgenet.com | GraphProduct | ❔ | had primary source | DisGeNET data, including gene to dise... |
| ncbigene.gene_refseq_uniprotkb_collab | Gene RefSeq UniProtKB Collaboration Data | gene_refseq_uniprotkb_collab.gz (1.1 GB) | MappingProduct | tsv | had primary source | Gene to RefSeq/UniProtKB collaboratio... |
| clinicalkg.graph | CKG Graph Dump | 1 | GraphProduct | mixed | had primary source | Neo4j database dump of the Clinical K... |
| drugmechdb.graph | DrugMechDB Graph Dataset | zenodo.8139357 | GraphProduct | mixed | had primary source | Curated mechanistic drug–disease path... |
| pheknowlator.graph | PheKnowLator graph | knowledge_graphs?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&inv=1&invt=Ab5_1Q&project=pheknowlator | GraphProduct | owl | had primary source | PheKnowLator graph files, including s... |
| microbiomekg.api | MicrobiomeKG Plover API | mbkp | ProgrammingInterface | http | had primary source | TRAPI web API for querying MicrobiomeKG |
| cancer-genome-interpreter.clinicalkg.graph | CKG Graph Dump | 1 | GraphProduct | mixed | had primary source | Neo4j database dump of the Clinical K... |
| genecards.gene.annotations ⚠ | GeneCards Gene Annotations | www.genecards.org | Product | http | had primary source | Integrated gene annotation data aggre... |
| ttd.uniprot-all ⚠ | All Target UniProt IDs | P2-01-TTD_uniprot_all.txt | Product | txt | had primary source | UniProt IDs for all targets in TTD |
| goa.uniprot ⚠ | UniProt GOA Annotations | UNIPROT | Product | txt | had primary source | GO annotations for all UniProtKB entries |
| goa.human ⚠ | Human GOA Annotations | HUMAN | Product | txt | had primary source | GO annotations for human proteins |
| goa.mouse ⚠ | Mouse GOA Annotations | MOUSE | Product | txt | had primary source | GO annotations for mouse proteins |
| goa.mapping-files ⚠ | GO Mapping Files | external2go | MappingProduct | txt | had primary source | Files containing transitive assignmen... |
| kinace.portal | KinAce Web Portal | kinace.kinametrix.com | GraphicalInterface | http | had primary source | Interactive web interface for explori... |
| kg-microbe.graph.raw | KG-Microbe KGX Graph - Raw | KGMicrobe-raw-20250222.tar.gz (11.6 GB) | GraphProduct | kgx | had primary source | Raw source files for all KG-Microbe f... |
| kg-microbe.graph.core | KG-Microbe KGX Graph - Core | latest | GraphProduct | kgx | had primary source | The core KG KG-Microbe-Core with onto... |
| kg-microbe.graph.biomedical | KG-Microbe KGX Graph - Biomedical | latest | GraphProduct | kgx | had primary source | Core plus human biomedical data (onto... |
| kg-microbe.graph.function | KG-Microbe KGX Graph - Function | KGMicrobe-function-20250222.tar.gz (4.3 GB) | GraphProduct | kgx | had primary source | Core plus Uniprot genome annotations |
| kg-microbe.graph.biomedical-function | KG-Microbe KGX Graph - Biomedical-Function | KGMicrobe-biomedical-function-20250222.tar.gz (4.3 GB) | GraphProduct | kgx | had primary source | Biomedical plus Uniprot genome annota... |
| biogrid.identifiers | BIOGRID-IDENTIFIERS-LATEST.tab.zip | BIOGRID-IDENTIFIERS-LATEST.tab.zip | MappingProduct | tsv | had primary source | A single delimited text file format c... |
| unibiomap.links | UniBioMap Graph Links | unibiomap.links.csv (1.3 GB) | GraphProduct | csv | had primary source | Core UniBioMap graph edges file. |
| unibiomap.auxs | UniBioMap Graph Auxiliaries | unibiomap.auxs.tsv (563.9 MB) | GraphProduct | tsv | had primary source | Auxiliary UniBioMap graph annotations... |
| unibiomap.pred | UniBioMap Predicted Graph | unibiomap.pred.csv (2.3 GB) | GraphProduct | csv | had primary source | Predicted UniBioMap graph edges with ... |
| unibiomap.pred.full | UniBioMap Predicted Graph (Full) | unibiomap.pred.full.csv (5.9 GB) | GraphProduct | csv | had primary source | Full unfiltered UniBioMap predicted g... |
| string.protein.links | STRING Protein Links | protein.links.v12.0.txt.gz (128.7 GB) | GraphProduct | txt | had primary source | protein network data (full network, s... |
| string.protein.links.detailed | STRING Protein Links Detailed | protein.links.detailed.v12.0.txt.gz (189.6 GB) | GraphProduct | txt | had primary source | protein network data (full network, i... |
| string.protein.links.full | STRING Protein Links Full | protein.links.full.v12.0.txt.gz (199.6 GB) | GraphProduct | txt | had primary source | protein network data (full network, i... |
| string.protein.physical.links | STRING Protein Physical Links | protein.physical.links.v12.0.txt.gz (11.1 GB) | GraphProduct | txt | had primary source | protein network data (physical subnet... |
| string.protein.physical.links.detailed | STRING Protein Physical Links Detailed | protein.physical.links.detailed.v12.0.txt.gz (13.8 GB) | GraphProduct | txt | had primary source | protein network data (physical subnet... |
| string.protein.physical.links.full | STRING Protein Physical Links Full | protein.physical.links.full.v12.0.txt.gz (14.5 GB) | GraphProduct | txt | had primary source | protein network data (physical subnet... |
| string.cog.links | STRING COG Links | COG.links.v12.0.txt.gz (176.8 MB) | GraphProduct | txt | had primary source | association scores between orthologou... |
| string.cog.links.detailed | STRING COG Links Detailed | COG.links.detailed.v12.0.txt.gz (238.7 MB) | GraphProduct | txt | had primary source | association scores (incl. subscores p... |
| string.database | STRING Database Network Schema | network_schema.v12.0.sql.gz (262.2 GB) | GraphProduct | ❔ | had primary source | full database, part II: the networks ... |
| proteomehd.data | ProteomeHD Data | Data | GraphProduct | ❔ | had primary source | ProteomeHD data files |
| swisslipid.enzymes | SwissLipids Enzymes | file.php?cas=download_files&file=enzymes.tsv (123.8 KB) | Product | tsv | had primary source | TSV export of lipid-related enzymes w... |
| swisslipid.lipids2uniprot | SwissLipids Lipids to UniProt | file.php?cas=download_files&file=lipids2uniprot.tsv (35.4 MB) | MappingProduct | tsv | had primary source | TSV mapping between SwissLipids lipid... |
| obo-db-ingest.uniprot.tsv | uniprot Nodes TSV | uniprot.tsv (3.6 MB) | Product | tsv | had primary source | uniprot Nodes TSV |
| obo-db-ingest.uniprot.ptm.tsv | uniprot.ptm Nodes TSV | uniprot.ptm.tsv (6.5 KB) | Product | tsv | had primary source | uniprot.ptm Nodes TSV |
| ckg.graph | CKG Graph Database Dump | 1 | GraphProduct | neo4j | had primary source | Graph database dump and additional re... |
| prokn.hgncuniprot.gene.is_protein.protein.edges | ProKN HGNC UniProt Gene-Protein Edges | DDKG_HGNCUNIPROT.Gene.IS_PROTEIN.Protein.edges.csv (1.7 MB) | GraphProduct | csv | had primary source | HGNC to UniProt gene is_protein edges |
| prokn.uniprotkb.protein.has_site.site.edges | ProKN UniProtKB Protein Site Edges | UniProtKB.Protein.HAS_SITE.Site.edges.csv (25.6 MB) | GraphProduct | csv | had primary source | UniProtKB protein has site edges |
| prokn.uniprotkb.protein.has_variant.variant.edges | ProKN UniProtKB Variant Edges | UniProtKB.Protein.HAS_VARIANT.Variant.edges.csv (18.8 MB) | GraphProduct | csv | had primary source | UniProtKB protein variant edges |
UniProt Protein Knowledge Base
Created: March 09, 2025 | Last modified: February 20, 2026