uniprot

is a Data Source.

UniProt Protein Knowledge Base

Domains

biological systems, proteomics, biomedical

License

CC-BY-4.0

Homepage

uniprot

Repository

www.uniprot.org

Infores ID

Unknown

FAIRsharing ID

Unknown

Products

From this Resource
ID Name URL Category Format Description
uniprot.swissprot.xml Reviewed (Swiss-Prot) XML uniprot_sprot.xml.gz (883.0 MB) Product kgx The Reviewed (Swiss-Prot) section of ...
uniprot.swissprot.fasta Reviewed (Swiss-Prot) FASTA uniprot_sprot.fasta.gz (88.8 MB) Product fasta The Reviewed (Swiss-Prot) section of ...
uniprot.trembl.xml Unreviewed (TrEMBL) XML uniprot_trembl.xml.gz (226.7 GB) Product xml The Unreviewed (TrEMBL) section of Un...
uniprot.trembl.fasta Unreviewed (TrEMBL) FASTA uniprot_trembl.fasta.gz (59.2 GB) Product fasta The Unreviewed (TrEMBL) section of Un...
ncbigene.gene_refseq_uniprotkb_collab Gene RefSeq UniProtKB Collaboration Data gene_refseq_uniprotkb_collab.gz (1.1 GB) MappingProduct tsv Gene to RefSeq/UniProtKB collaboratio...
clinicalkg.graph CKG Graph Dump GraphProduct mixed Neo4j database dump of the Clinical K...
drugmechdb.graph DrugMechDB Graph Dataset zenodo.8139357 GraphProduct mixed Curated mechanistic drug–disease path...
From other Resources
ID Name URL Category Format Description
kg-microbe.graph.uniprot KG-Microbe UniProt microbe transform KGMicrobe-transformed-uniprot-microbes-20240924.tar.gz (4.5 GB) GraphProduct kgx UniProt proteins from microbes, as gr...
pombase.genes-products PomBase gene names and products gene_IDs_names_products.tsv Product tsv Tab-delimited file of systematic ID, ...
pombase.to-uniprot PomBase to UniProt map PomBase2UniProt.tsv (27.0 KB) MappingProduct tsv Tab-delimited file with the PomBase s...
chembl.map_to_uniprot ChEMBL map to UniProt chembl_uniprot_mapping.txt (989.2 KB) MappingProduct Mapping between chembl_35 target chem...
oma.mapping.uniprot OMA to UniProt Mapping oma-uniprot.txt.gz MappingProduct tsv Mapping of OMA identifiers to UniProt...
spoke.graph SPOKE Graph GraphProduct The SPOKE knowledge graph containing ...
ubkg.neo4j UBKG Neo4j Docker Distribution ubkg-downloads.xconsortia.org GraphProduct Turnkey neo4j distributions that depl...
ubkg.csv UBKG Ontology CSV Files ubkg-downloads.xconsortia.org GraphProduct csv Ontology CSV files that can be import...
rtx-kg2.graph.nodes RTX-KG2.10.1c KGX JSONL Nodes kg2c-2.10.1-v1.0-nodes.jsonl.gz (359.1 MB) GraphProduct kgx-jsonl Nodes for KGX distribution of the RTX...
rtx-kg2.graph.edges RTX-KG2.10.1c KGX JSONL Edges kg2c-2.10.1-v1.0-edges.jsonl.gz (1.7 GB) GraphProduct kgx-jsonl Edges for KGX distribution of the RTX...
rtx-kg2.neo4j RTX-KG2 Neo4j arax.ncats.io ProgrammingInterface Neo4j distribution of the RTX-KG2 as ...
disgenet.data DisGeNET Data www.disgenet.com GraphProduct DisGeNET data, including gene to dise...
pheknowlator.graph PheKnowLator graph knowledge_graphs?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&inv=1&invt=Ab5_1Q&project=pheknowlator GraphProduct owl PheKnowLator graph files, including s...

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