is a Data Source.
UniProt Protein Knowledge Base
biological systems, proteomics, biomedical
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| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| uniprot.swissprot.xml | Reviewed (Swiss-Prot) XML | uniprot_sprot.xml.gz (883.0 MB) | Product | kgx | The Reviewed (Swiss-Prot) section of ... |
| uniprot.swissprot.fasta | Reviewed (Swiss-Prot) FASTA | uniprot_sprot.fasta.gz (88.8 MB) | Product | fasta | The Reviewed (Swiss-Prot) section of ... |
| uniprot.trembl.xml | Unreviewed (TrEMBL) XML | uniprot_trembl.xml.gz (226.7 GB) | Product | xml | The Unreviewed (TrEMBL) section of Un... |
| uniprot.trembl.fasta | Unreviewed (TrEMBL) FASTA | uniprot_trembl.fasta.gz (59.2 GB) | Product | fasta | The Unreviewed (TrEMBL) section of Un... |
| ncbigene.gene_refseq_uniprotkb_collab | Gene RefSeq UniProtKB Collaboration Data | gene_refseq_uniprotkb_collab.gz (1.1 GB) | MappingProduct | tsv | Gene to RefSeq/UniProtKB collaboratio... |
| clinicalkg.graph | CKG Graph Dump | 1 | GraphProduct | mixed | Neo4j database dump of the Clinical K... |
| drugmechdb.graph | DrugMechDB Graph Dataset | zenodo.8139357 | GraphProduct | mixed | Curated mechanistic drug–disease path... |
| cancer-genome-interpreter.clinicalkg.graph | CKG Graph Dump | 1 | GraphProduct | mixed | Neo4j database dump of the Clinical K... |
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| kg-microbe.graph.uniprot | KG-Microbe UniProt microbe transform | KGMicrobe-transformed-uniprot-microbes-20240924.tar.gz (4.5 GB) | GraphProduct | kgx | UniProt proteins from microbes, as gr... |
| pombase.genes-products ⚠ | PomBase gene names and products | gene_IDs_names_products.tsv | Product | tsv | Tab-delimited file of systematic ID, ... |
| pombase.to-uniprot | PomBase to UniProt map | PomBase2UniProt.tsv (27.0 KB) | MappingProduct | tsv | Tab-delimited file with the PomBase s... |
| chembl.map_to_uniprot | ChEMBL map to UniProt | chembl_uniprot_mapping.txt (989.2 KB) | MappingProduct | ❔ | Mapping between chembl_35 target chem... |
| oma.mapping.uniprot ⚠ | OMA to UniProt Mapping | oma-uniprot.txt.gz | MappingProduct | tsv | Mapping of OMA identifiers to UniProt... |
| spoke.graph | SPOKE Graph | ❔ | GraphProduct | ❔ | The SPOKE knowledge graph containing ... |
| ubkg.neo4j | UBKG Neo4j Docker Distribution | ubkg-downloads.xconsortia.org | GraphProduct | ❔ | Turnkey neo4j distributions that depl... |
| ubkg.csv | UBKG Ontology CSV Files | ubkg-downloads.xconsortia.org | GraphProduct | csv | Ontology CSV files that can be import... |
| rtx-kg2.graph.nodes | RTX-KG2.10.1c KGX JSONL Nodes | kg2c-2.10.1-v1.0-nodes.jsonl.gz (359.1 MB) | GraphProduct | kgx-jsonl | Nodes for KGX distribution of the RTX... |
| rtx-kg2.graph.edges | RTX-KG2.10.1c KGX JSONL Edges | kg2c-2.10.1-v1.0-edges.jsonl.gz (1.7 GB) | GraphProduct | kgx-jsonl | Edges for KGX distribution of the RTX... |
| rtx-kg2.neo4j | RTX-KG2 Neo4j | arax.ncats.io | ProgrammingInterface | ❔ | Neo4j distribution of the RTX-KG2 as ... |
| disgenet.data | DisGeNET Data | www.disgenet.com | GraphProduct | ❔ | DisGeNET data, including gene to dise... |
| pheknowlator.graph | PheKnowLator graph | knowledge_graphs?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&inv=1&invt=Ab5_1Q&project=pheknowlator | GraphProduct | owl | PheKnowLator graph files, including s... |
| microbiomekg.api | MicrobiomeKG Plover API | mbkp | ProgrammingInterface | http | TRAPI web API for querying MicrobiomeKG |