infores:uniprot
Unknown
| ID | Name | URL | Category | Format | Description |
|---|---|---|---|---|---|
| uniprot.swissprot.xml | Reviewed (Swiss-Prot) XML | uniprot_sprot.xml.gz (883.0 MB) | Product | kgx | The Reviewed (Swiss-Prot) section of ... |
| uniprot.swissprot.fasta | Reviewed (Swiss-Prot) FASTA | uniprot_sprot.fasta.gz (88.8 MB) | Product | fasta | The Reviewed (Swiss-Prot) section of ... |
| uniprot.trembl.xml | Unreviewed (TrEMBL) XML | uniprot_trembl.xml.gz (226.7 GB) | Product | xml | The Unreviewed (TrEMBL) section of Un... |
| uniprot.trembl.fasta | Unreviewed (TrEMBL) FASTA | uniprot_trembl.fasta.gz (59.2 GB) | Product | fasta | The Unreviewed (TrEMBL) section of Un... |
| uniprot.kg-bioportal | UNIPROT KGX graph (KG-Bioportal) | UNIPROT.tar.gz (7.0 KB) | Graph | kgx | KGX TSV transform of Uniprot Core Ont... |
| ID | Name | URL | Category | Format | Relation | Description |
|---|---|---|---|---|---|---|
| kg-microbe.graph.uniprot | KG-Microbe UniProt microbe transform | latest | Graph | kgx | had primary source | UniProt proteins from microbes, as gr... |
| pombase.genes-products ⚠ | PomBase gene names and products | gene_IDs_names_products.tsv | Product | tsv | had primary source | Tab-delimited file of systematic ID, ... |
| pombase.to-uniprot | PomBase to UniProt map | PomBase2UniProt.tsv (27.0 KB) | Mapping | tsv | had primary source | Tab-delimited file with the PomBase s... |
| chembl.map_to_uniprot | ChEMBL map to UniProt | chembl_uniprot_mapping.txt (989.2 KB) | Mapping | txt | had primary source | Mapping between chembl_35 target chem... |
| oma.mapping.uniprot | OMA to UniProt Mapping | oma-uniprot.txt.gz | Mapping | tsv | had primary source | Mapping of OMA identifiers to UniProt... |
| spoke.graph | SPOKE Graph | data-tools | Graph | http | had primary source | The SPOKE knowledge graph containing ... |
| ubkg.neo4j | UBKG Neo4j Docker Distribution | ubkg-downloads.xconsortia.org | Graph | neo4j | had primary source | Turnkey neo4j distributions that depl... |
| ubkg.csv | UBKG Ontology CSV Files | ubkg-downloads.xconsortia.org | Graph | csv | had primary source | Ontology CSV files that can be import... |
| rtx-kg2.graph.nodes | RTX-KG2.10.1c KGX JSONL Nodes | kg2c-2.10.1-v1.0-nodes.jsonl.gz (359.1 MB) | Graph | kgx-jsonl | had primary source | Nodes for KGX distribution of the RTX... |
| rtx-kg2.graph.edges | RTX-KG2.10.1c KGX JSONL Edges | kg2c-2.10.1-v1.0-edges.jsonl.gz (1.7 GB) | Graph | kgx-jsonl | had primary source | Edges for KGX distribution of the RTX... |
| rtx-kg2.neo4j | RTX-KG2 Neo4j | arax.ncats.io | Programming Interface | http | had primary source | Neo4j distribution of the RTX-KG2 as ... |
| disgenet.data | DisGeNET Data | www.disgenet.com | Graph | http | had primary source | DisGeNET data, including gene to dise... |
| ncbigene.gene_refseq_uniprotkb_collab | Gene RefSeq UniProtKB Collaboration Data | gene_refseq_uniprotkb_collab.gz (749.8 MB) | Mapping | tsv | had primary source | Gene to RefSeq/UniProtKB collaboratio... |
| clinicalkg.graph | CKG Graph Dump | 1 | Graph | mixed | had primary source | Neo4j database dump of the Clinical K... |
| drugmechdb.graph | DrugMechDB Graph Dataset | zenodo.8139357 | Graph | mixed | had primary source | Curated mechanistic drug–disease path... |
| pheknowlator.graph | PheKnowLator graph | knowledge_graphs?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&inv=1&invt=Ab5_1Q&project=pheknowlator | Graph | owl | had primary source | PheKnowLator graph files, including s... |
| microbiomekg.api | MicrobiomeKG Plover TRAPI API | mbkp | Programming Interface | http | had primary source | Plover-hosted TRAPI web API for query... |
| cancer-genome-interpreter.clinicalkg.graph | CKG Graph Dump | 1 | Graph | mixed | had primary source | Neo4j database dump of the Clinical K... |
| genecards.gene.annotations ⚠ | GeneCards Gene Annotations | www.genecards.org | Product | http | had primary source | Integrated gene annotation data aggre... |
| ttd.uniprot-all ⚠ | All Target UniProt IDs | P2-01-TTD_uniprot_all.txt | Product | txt | had primary source | UniProt IDs for all targets in TTD |
| goa.uniprot | UniProt GOA Annotations | UNIPROT | Product | txt | had primary source | GO annotations for all UniProtKB entries |
| goa.human | Human GOA Annotations | HUMAN | Product | txt | had primary source | GO annotations for human proteins |
| goa.mouse | Mouse GOA Annotations | MOUSE | Product | txt | had primary source | GO annotations for mouse proteins |
| goa.mapping-files | GO Mapping Files | external2go | Mapping | txt | had primary source | Files containing transitive assignmen... |
| kinace.portal | KiNet Web Portal | kinet.kinametrix.com | Graphical Interface | http | was derived from | Interactive Shiny web interface for e... |
| kg-microbe.graph.raw | KG-Microbe KGX Graph - Raw | latest | Graph | kgx | had primary source | Raw source files for all KG-Microbe f... |
| kg-microbe.graph.core | KG-Microbe KGX Graph - Core | latest | Graph | kgx | had primary source | The core KG KG-Microbe-Core with onto... |
| kg-microbe.graph.biomedical | KG-Microbe KGX Graph - Biomedical | latest | Graph | kgx | had primary source | Core plus human biomedical data (onto... |
| kg-microbe.graph.function | KG-Microbe KGX Graph - Function | latest | Graph | kgx | had primary source | Core plus Uniprot genome annotations |
| kg-microbe.graph.biomedical-function | KG-Microbe KGX Graph - Biomedical-Function | KGMicrobe-biomedical-function-20250222.tar.gz (4.3 GB) | Graph | kgx | had primary source | Biomedical plus Uniprot genome annota... |
| biogrid.identifiers | BIOGRID-IDENTIFIERS-LATEST.tab.zip | BIOGRID-IDENTIFIERS-LATEST.tab.zip | Mapping | tsv | had primary source | A single delimited text file format c... |
| unibiomap.links | UniBioMap Graph Links | unibiomap.links.csv (1.3 GB) | Graph | csv | had primary source | Core UniBioMap graph edges file. |
| unibiomap.auxs | UniBioMap Graph Auxiliaries | unibiomap.auxs.tsv (563.9 MB) | Graph | tsv | had primary source | Auxiliary UniBioMap graph annotations... |
| unibiomap.pred | UniBioMap Predicted Graph | unibiomap.pred.csv (2.3 GB) | Graph | csv | had primary source | Predicted UniBioMap graph edges with ... |
| unibiomap.pred.full | UniBioMap Predicted Graph (Full) | unibiomap.pred.full.csv (5.9 GB) | Graph | csv | had primary source | Full unfiltered UniBioMap predicted g... |
| string.protein.links | STRING Protein Links | protein.links.v12.0.txt.gz (128.7 GB) | Graph | txt | had primary source | protein network data (full network, s... |
| string.protein.links.detailed | STRING Protein Links Detailed | protein.links.detailed.v12.0.txt.gz (189.6 GB) | Graph | txt | had primary source | protein network data (full network, i... |
| string.protein.links.full | STRING Protein Links Full | protein.links.full.v12.0.txt.gz (199.6 GB) | Graph | txt | had primary source | protein network data (full network, i... |
| string.protein.physical.links | STRING Protein Physical Links | protein.physical.links.v12.0.txt.gz (11.1 GB) | Graph | txt | had primary source | protein network data (physical subnet... |
| string.protein.physical.links.detailed | STRING Protein Physical Links Detailed | protein.physical.links.detailed.v12.0.txt.gz (13.8 GB) | Graph | txt | had primary source | protein network data (physical subnet... |
| string.protein.physical.links.full | STRING Protein Physical Links Full | protein.physical.links.full.v12.0.txt.gz (14.5 GB) | Graph | txt | had primary source | protein network data (physical subnet... |
| string.cog.links | STRING COG Links | COG.links.v12.0.txt.gz (176.8 MB) | Graph | txt | had primary source | association scores between orthologou... |
| string.cog.links.detailed | STRING COG Links Detailed | COG.links.detailed.v12.0.txt.gz (238.7 MB) | Graph | txt | had primary source | association scores (incl. subscores p... |
| string.database | STRING Database Network Schema | network_schema.v12.0.sql.gz (262.2 GB) | Graph | postgres | had primary source | full database, part II: the networks ... |
| swisslipid.enzymes | SwissLipids Enzymes | file.php?cas=download_files&file=enzymes.tsv (123.8 KB) | Product | tsv | had primary source | TSV export of lipid-related enzymes w... |
| swisslipid.lipids2uniprot | SwissLipids Lipids to UniProt | file.php?cas=download_files&file=lipids2uniprot.tsv (35.4 MB) | Mapping | tsv | had primary source | TSV mapping between SwissLipids lipid... |
| obo-db-ingest.uniprot.tsv | uniprot Nodes TSV | uniprot.tsv (3.6 MB) | Product | tsv | had primary source | uniprot Nodes TSV |
| obo-db-ingest.uniprot.ptm.tsv | uniprot.ptm Nodes TSV | uniprot.ptm.tsv (6.5 KB) | Product | tsv | had primary source | uniprot.ptm Nodes TSV |
| ckg.graph | CKG Graph Database Dump | 1 | Graph | neo4j | had primary source | Graph database dump and additional re... |
| prokn.hgncuniprot.gene.is_protein.protein.edges | ProKN HGNC UniProt Gene-Protein Edges | DDKG_HGNCUNIPROT.Gene.IS_PROTEIN.Protein.edges.csv (1.7 MB) | Graph | csv | had primary source | HGNC to UniProt gene is_protein edges |
| prokn.uniprotkb.protein.has_site.site.edges | ProKN UniProtKB Protein Site Edges | UniProtKB.Protein.HAS_SITE.Site.edges.csv (25.6 MB) | Graph | csv | had primary source | UniProtKB protein has site edges |
| prokn.uniprotkb.protein.has_variant.variant.edges | ProKN UniProtKB Variant Edges | UniProtKB.Protein.HAS_VARIANT.Variant.edges.csv (18.8 MB) | Graph | csv | had primary source | UniProtKB protein variant edges |
| medkg.site | MedKG Site | medkg | Graphical Interface | http | had primary source | Graphical interface for MedKG |
| suppkg.source-data | SuppKG Source Data Repository | SuppKG | Process | http | had primary source | Source data directory used for SuppKG... |
| oregano.graph | OREGANO Knowledge Graph | Graphs | Graph | http | was derived from | The OREGANO knowledge graph dataset i... |
| pharmebinet.json | PharMeBINet JSON Release | content (1.8 GB) | Graph | json | was derived from | PharMeBINet V2 JSON release published... |
| pharmebinet.tsv | PharMeBINet TSV Release | content (1.8 GB) | Graph | tsv | was derived from | PharMeBINet V2 TSV release published ... |
| pharmebinet.graphml | PharMeBINet GraphML Release | content (1.9 GB) | Graph | mixed | was derived from | PharMeBINet V2 GraphML release publis... |
| pharmebinet.neo4j | PharMeBINet Neo4j Database | content (3.6 GB) | Graph | neo4j | was derived from | PharMeBINet V2 Neo4j database release... |
| pharmebinet.neo4j.dump | PharMeBINet Neo4j Dump | content (3.4 GB) | Graph | neo4j | was derived from | PharMeBINet V2 Neo4j dump release pub... |
| tcrd.database_download ⚠ | TCRD Database Downloads | TCRD | Product | mysql | was influenced by | MySQL database dump files containing ... |
| tcrd.api | Pharos API | api | Programming Interface | http | was influenced by | RESTful API providing programmatic ac... |
| tcrd.documentation ⚠ | TCRD Documentation | TCRD | Documentation | http | was influenced by | Comprehensive documentation describin... |
| disprot.downloads | DisProt Downloads | download | Product | json | was informed by | Bulk download of DisProt data in mult... |
| epsd.download | EPSD Data Download | Download.php | Product | http | was derived from | Download page for complete phosphoryl... |
| goa.ftp | GOA FTP Site | goa | Product | http | was informed by | FTP site containing current and archi... |
| hra.data | HRA Data Downloads | overview-data | Product | mixed | used | Downloadable data files including ana... |
| iid.human_annotated_ppis | IID Human Annotated PPIs | human_annotated_PPIs.txt.gz (144.0 MB) | Graph | tsv | was derived from | IID annotated human protein-protein i... |
| iid.mouse_annotated_ppis | IID Mouse Annotated PPIs | mouse_annotated_PPIs.txt.gz (38.2 MB) | Graph | tsv | was derived from | IID annotated mouse protein-protein i... |
| iptmnet.ptm | iPTMnet PTM Table | ptm.txt (42.1 MB) | Graph | tsv | was derived from | Current iPTMnet PTM record table with... |
| iptmnet.protein | iPTMnet Protein Table | protein.txt (8.9 MB) | Product | tsv | was derived from | Current iPTMnet protein table with Un... |
| markerdb.api | MarkerDB API | markerdb_api | Programming Interface | http | was informed by | MarkerDB API documentation and endpoi... |
| markerdb.proteins.tsv | MarkerDB Protein Biomarkers TSV | download_all_proteins?format=tsv | Product | tsv | was informed by | TSV export of MarkerDB protein biomar... |
| pathwaycommons.biopax | Integrated BioPAX Model | pc-biopax.owl.gz (1.6 GB) | Product | biopax | was derived from | PC v14 integrated BioPAX Level 3 unif... |
| preppi.download ⚠ | PrePPI High-Confidence Interactome | preppi.human_af.interactome.txt.tar.gz (39.6 MB) | Product | txt | was informed by | High-confidence PrePPI human interact... |
| proteomehd.uniprot_annotations | ProteomeHD UniProt Annotation File | uniprot-all.7z (837.0 KB) | Product | txt | was derived from | Reviewed UniProt protein annotation f... |
| dbptm.downloads | dbPTM Download Datasets | download.php | Product | tsv | was derived from | dbPTM downloads for experimental and ... |
| dbsno.downloads ⚠ | dbSNO Download Dataset | download.php | Product | tsv | was derived from | Tab-delimited dbSNO 3.0 S-nitrosylati... |
| nextprot.portal | neXtProt Web Platform | www.nextprot.org | Graphical Interface | http | was derived from | neXtProt web platform for searching a... |
| nextprot.api | neXtProt API | api.nextprot.org | Programming Interface | json | was derived from | neXtProt REST API for programmatic ac... |
| nextprot.sparql | neXtProt SPARQL Endpoint | sparql.nextprot.org | Programming Interface | http | was derived from | neXtProt SPARQL endpoint for querying... |
| nextprot.downloads | neXtProt Downloads | downloads | Product | mixed | was derived from | neXtProt downloadable human protein d... |
| pathwaycommons.downloads | Pathway Commons Data Downloads | v14 | Product | mixed | was derived from | Download directory for Pathway Common... |
| pathwaycommons.sif | SIF Network Format | pc-hgnc.sif.gz (9.4 MB) | Product | sif | was derived from | PC v14 Simple Interaction Format netw... |
| pathwaycommons.gmt | GMT Gene Set Format | pc-hgnc.gmt.gz (256.4 KB) | Product | tsv | was derived from | PC v14 Gene Matrix Transposed gene se... |
| pathwaycommons.txt | Extended SIF TXT Format | pc-hgnc.txt.gz (110.3 MB) | Product | txt | was derived from | PC v14 tab-delimited extended SIF nod... |
| phosphoelm.dataset | Phospho.ELM Dataset | dataset.html | Product | mixed | was derived from | Phospho.ELM version 9.0 dataset reque... |
| cardiokg.neo4j | CardioKG Neo4j graph construction scripts | zenodo.16025953 | Graph | neo4j | used | Neo4j construction artifacts for Card... |
| biobtree.api | BioBTree REST API | api | Programming Interface | http | had primary source | REST API for searching identifiers an... |
| genecards.web.interface | GeneCards Web Interface | www.genecards.org | Graphical Interface | http | had primary source | Web-based interface for searching and... |
| biobtree.graph.human-subgraph | BioBTree Knowledge Graph - Human Subgraph (KGX) | 20816742 | Graph | kgx | had primary source | Human-scoped, Neo4j-ready subgraph of... |
| gp-kg.graph | GP-KG | GP_KG.txt (46.2 MB) | Graph | txt | was derived from | GP_KG.txt |
| kg-covid-19.graph ⚠ | KG-COVID-19 graph | kg-covid-19 | Graph | kgx | had primary source | KGX nodes and edges for KG-COVID-19 |
| kg-jensenlab-diseases.nodes.kgx | DISEASES KGX nodes | DISEASES_kgx_nodes.jsonl (130 B) | Graph | kgx-jsonl | had primary source | KGX nodes file for JensenLab DISEASES KG |
| kg-jensenlab-diseases.edges.kgx | DISEASES KGX edges | DISEASES_kgx_edges.jsonl (132 B) | Graph | kgx-jsonl | had primary source | KGX edges file for JensenLab DISEASES KG |
| kg-jensenlab-diseases.edges.trapi | DISEASES TRAPI edges | DISEASES_trapi_edges.jsonl (132 B) | Graph | trapi-jsonl | had primary source | TRAPI edges file for JensenLab DISEAS... |
| molecular-data-kp.graph.nodes | Nodes for Molecular Data KP | nodes.tsv (3.4 GB) | Graph | kgx | had primary source | KGX nodes for Molecular Data KP |
| molecular-data-kp.graph.edges | Edges for Molecular Data KP | edges.tsv (18.8 GB) | Graph | kgx | had primary source | KGX edges for Molecular Data KP |
| unibiomap.protein_desc ⚠ | UniBioMap Protein Descriptions | protein_desc.json | Graph | json | had primary source | UniBioMap protein entity descriptions. |
| spoke-okn.graph | SPOKE-OKN Graph | spoke.ucsf.edu | Graph | ttl | was influenced by | The SPOKE-OKN knowledge graph, an OKN... |
| pubchem.substances.asn | PubChem Substances ASN | ASN | Product | xml | was influenced by | PubChem substance information in ASN.... |
| pubchem.substances.sdf | PubChem Substances SDF | SDF | Product | sdf | was influenced by | PubChem substance information in SDF ... |
| aopwiki-rdf.ttl | AOP-Wiki RDF Turtle Dataset | data | Graph | ttl | used | The AOP-Wiki RDF dataset in RDF/Turtl... |
UniProt Protein Knowledge Base
Created: March 09, 2025 | Last modified: September 23, 2026